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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0148500.2 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 1528 46.79319 7
Osa02LNT0148500.1 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 3778 48.78242 19
Osa02LNT0148600.3 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4563 46.41683 32
Osa02LNT0148600.2 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4758 44.32535 33
Osa02LNT0148600.4 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4366 45.05268 35
Osa02LNT0148600.1 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4530 46.66667 35
Osa02LNT0139900.1 2 Osa02LNG0139900 434565-436081 sense lncRNA 1421 59.04293 2
Osa02LNT0148700.1 2 Osa02LNG0148700 4420596-4421919 intergenetic lncRNA (lincRNA) 1324 37.68882 1
Osa02LNT0148800.1 2 Osa02LNG0148800 4455016-4457715 long non-coding(lnc) isoforms of known genes 2043 46.15761 5
Osa02LNT0148900.1 2 Osa02LNG0148900 4574675-4576646 long non-coding(lnc) isoforms of known genes 1872 42.57479 2
Osa02LNT0149000.1 2 Osa02LNG0149000 4604019-4607369 long non-coding(lnc) isoforms of known genes 1807 50.52573 10
Osa02LNT0149100.1 2 Osa02LNG0149100 4696839-4699508 Antisense lncRNA 350 56.0 3
Osa02LNT0149200.1 2 Osa02LNG0149200 4838513-4841877 long non-coding(lnc) isoforms of known genes 2023 47.10826 4
Osa02LNT0149300.1 2 Osa02LNG0149300 4843988-4847197 long non-coding(lnc) isoforms of known genes 1432 48.67318 10
Osa02LNT0149400.1 2 Osa02LNG0149400 4847753-4852502 long non-coding(lnc) isoforms of known genes 2485 55.5332 10
Osa02LNT0140000.1 2 Osa02LNG0140000 493564-494358 intergenetic lncRNA (lincRNA) 542 53.50554 2
Osa02LNT0140000.2 2 Osa02LNG0140000 493564-494358 intergenetic lncRNA (lincRNA) 556 53.05755 2
Osa02LNT0149600.1 2 Osa02LNG0149600 4949654-4952351 long non-coding(lnc) isoforms of known genes 1466 58.5266 2
Osa02LNT0149500.1 2 Osa02LNG0149500 4953842-4954058 intergenetic lncRNA (lincRNA) 217 24.88479 1
Osa02LNT0140100.1 2 Osa02LNG0140100 496768-500351 long non-coding(lnc) isoforms of known genes 1571 51.3049 11
Osa02LNT0149700.1 2 Osa02LNG0149700 4967973-4972928 long non-coding(lnc) isoforms of known genes 869 43.95857 2
Osa02LNT0149700.2 2 Osa02LNG0149700 4967973-4972928 long non-coding(lnc) isoforms of known genes 805 46.45963 3
Osa02LNT0139200.1 2 Osa02LNG0139200 50407-55874 long non-coding(lnc) isoforms of known genes 2133 48.0075 12
Osa02LNT0149800.1 2 Osa02LNG0149800 5058825-5062592 long non-coding(lnc) isoforms of known genes 2390 47.36402 6
Osa02LNT0140200.1 2 Osa02LNG0140200 508837-517246 long non-coding(lnc) isoforms of known genes 3545 45.07757 15
Osa02LNT0149900.1 2 Osa02LNG0149900 5118296-5121512 long non-coding(lnc) isoforms of known genes 2076 55.39499 4
Osa02LNT0150000.1 2 Osa02LNG0150000 5220258-5228047 long non-coding(lnc) isoforms of known genes 5212 41.84574 12
Osa02LNT0150000.2 2 Osa02LNG0150000 5220258-5228047 long non-coding(lnc) isoforms of known genes 5040 38.96825 11
Osa02LNT0150100.1 2 Osa02LNG0150100 5224812-5225130 intergenetic lncRNA (lincRNA) 319 38.24451 1
Osa02LNT0150200.1 2 Osa02LNG0150200 5254204-5257590 long non-coding(lnc) isoforms of known genes 1544 54.14508 7
Osa02LNT0150300.1 2 Osa02LNG0150300 5322829-5323410 intronic lncRNA 582 28.69416 1
Osa02LNT0150400.1 2 Osa02LNG0150400 5331919-5336909 long non-coding(lnc) isoforms of known genes 1914 48.32811 10
Osa02LNT0150500.1 2 Osa02LNG0150500 5373105-5380171 long non-coding(lnc) isoforms of known genes 2477 51.43319 16
Osa02LNT0150600.1 2 Osa02LNG0150600 5422168-5426063 long non-coding(lnc) isoforms of known genes 1480 48.64865 13
Osa02LNT0150700.1 2 Osa02LNG0150700 5465074-5468118 long non-coding(lnc) isoforms of known genes 1784 52.13004 4
Osa02LNT0150800.1 2 Osa02LNG0150800 5478759-5480881 long non-coding(lnc) isoforms of known genes 1613 46.6832 2
Osa02LNT0140300.1 2 Osa02LNG0140300 549346-551218 intergenetic lncRNA (lincRNA) 1588 42.75819 3
Osa02LNT0150900.1 2 Osa02LNG0150900 5511243-5517860 long non-coding(lnc) isoforms of known genes 3726 47.04777 21
Osa02LNT0151000.1 2 Osa02LNG0151000 5587185-5593645 long non-coding(lnc) isoforms of known genes 3806 46.1114 9
Osa02LNT0151100.1 2 Osa02LNG0151100 5595457-5598161 long non-coding(lnc) isoforms of known genes 1394 44.97848 7
Osa02LNT0151200.1 2 Osa02LNG0151200 5640781-5644543 long non-coding(lnc) isoforms of known genes 1013 50.83909 5
Osa02LNT0151300.2 2 Osa02LNG0151300 5663142-5668400 long non-coding(lnc) isoforms of known genes 2402 49.75021 5
Osa02LNT0151300.1 2 Osa02LNG0151300 5663142-5668400 long non-coding(lnc) isoforms of known genes 2298 50.39164 6
Osa02LNT0140500.1 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8919 43.099 19
Osa02LNT0140500.2 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8490 43.47468 20
Osa02LNT0151400.1 2 Osa02LNG0151400 5740443-5742451 long non-coding(lnc) isoforms of known genes 766 53.91645 5
Osa02LNT0151500.1 2 Osa02LNG0151500 5744912-5748113 long non-coding(lnc) isoforms of known genes 1204 49.33555 8
Osa02LNT0473800.1 2 Osa02LNG0473800 5797029-5797254 intergenetic lncRNA (lincRNA) 226 48.67257 1
Osa02LNT0151600.1 2 Osa02LNG0151600 5798925-5806527 long non-coding(lnc) isoforms of known genes 1041 56.67627 5
Osa02LNT0151600.2 2 Osa02LNG0151600 5798925-5806527 long non-coding(lnc) isoforms of known genes 1069 56.12722 5