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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0521900.1 7 Osa07LNG0521900 1506858-1507132 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa07LNT0377800.1 7 Osa07LNG0377800 15069433-15077960 long non-coding(lnc) isoforms of known genes 3632 44.38326 18
Osa07LNT0522000.1 7 Osa07LNG0522000 1507199-1507442 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa07LNT0522100.1 7 Osa07LNG0522100 1507199-1507442 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa07LNT0377900.1 7 Osa07LNG0377900 15204094-15211471 long non-coding(lnc) isoforms of known genes 3474 46.20035 10
Osa07LNT0378000.1 7 Osa07LNG0378000 15280001-15282788 sense lncRNA 1220 42.04918 3
Osa07LNT0378000.2 7 Osa07LNG0378000 15280001-15282788 sense lncRNA 683 46.99854 4
Osa07LNT0378100.1 7 Osa07LNG0378100 15310363-15315649 sense lncRNA 4384 45.71168 3
Osa07LNT0363300.1 7 Osa07LNG0363300 154906-158601 long non-coding(lnc) isoforms of known genes 1795 56.04457 7
Osa07LNT0527700.1 7 Osa07LNG0527700 15520945-15521217 intergenetic lncRNA (lincRNA) 273 24.54212 1
Osa07LNT0527600.1 7 Osa07LNG0527600 15520945-15521217 intergenetic lncRNA (lincRNA) 273 24.54212 1
Osa07LNT0527800.1 7 Osa07LNG0527800 15586609-15586883 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa07LNT0527900.1 7 Osa07LNG0527900 15586609-15586883 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa07LNT0378200.1 7 Osa07LNG0378200 15618430-15621910 long non-coding(lnc) isoforms of known genes 546 48.9011 4
Osa07LNT0528000.1 7 Osa07LNG0528000 15644990-15645190 intergenetic lncRNA (lincRNA) 201 37.31343 1
Osa07LNT0528100.1 7 Osa07LNG0528100 15713194-15713454 intergenetic lncRNA (lincRNA) 261 66.66667 1
Osa07LNT0378300.1 7 Osa07LNG0378300 15726341-15730079 long non-coding(lnc) isoforms of known genes 1597 58.35942 3
Osa07LNT0378400.1 7 Osa07LNG0378400 15732952-15742662 long non-coding(lnc) isoforms of known genes 4957 42.92919 19
Osa07LNT0378400.2 7 Osa07LNG0378400 15732952-15742662 long non-coding(lnc) isoforms of known genes 5482 46.04159 24
Osa07LNT0378400.3 7 Osa07LNG0378400 15732952-15742662 long non-coding(lnc) isoforms of known genes 5520 45.97826 24
Osa07LNT0378600.1 7 Osa07LNG0378600 15768528-15787386 long non-coding(lnc) isoforms of known genes 3368 46.88242 21
Osa07LNT0378600.2 7 Osa07LNG0378600 15768528-15787386 long non-coding(lnc) isoforms of known genes 3270 47.15596 22
Osa07LNT0378500.1 7 Osa07LNG0378500 15868984-15874066 long non-coding(lnc) isoforms of known genes 3734 41.13551 7
Osa07LNT0378700.1 7 Osa07LNG0378700 15938342-15941043 intergenetic lncRNA (lincRNA) 670 48.65672 3
Osa07LNT0378800.1 7 Osa07LNG0378800 16013083-16022623 long non-coding(lnc) isoforms of known genes 3641 42.21368 12
Osa07LNT0528200.1 7 Osa07LNG0528200 16069069-16069290 intergenetic lncRNA (lincRNA) 222 58.10811 1
Osa07LNT0364400.1 7 Osa07LNG0364400 1610781-1612163 intronic lncRNA 1383 44.68547 1
Osa07LNT0378900.1 7 Osa07LNG0378900 16196212-16205951 long non-coding(lnc) isoforms of known genes 3722 43.55185 9
Osa07LNT0528400.1 7 Osa07LNG0528400 16417572-16417816 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa07LNT0528300.1 7 Osa07LNG0528300 16417572-16417816 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa07LNT0379000.2 7 Osa07LNG0379000 16426969-16429841 long non-coding(lnc) isoforms of known genes 1379 47.78825 6
Osa07LNT0379000.1 7 Osa07LNG0379000 16426969-16429841 long non-coding(lnc) isoforms of known genes 2003 41.38792 5
Osa07LNT0379100.1 7 Osa07LNG0379100 16522454-16524005 long non-coding(lnc) isoforms of known genes 638 52.66458 4
Osa07LNT0379200.1 7 Osa07LNG0379200 16705383-16708472 intergenetic lncRNA (lincRNA) 901 47.72475 2
Osa07LNT0379300.1 7 Osa07LNG0379300 16815439-16816828 sense lncRNA 876 52.28311 2
Osa07LNT0379400.1 7 Osa07LNG0379400 16941892-16946832 sense lncRNA 4488 45.56595 2
Osa07LNT0528600.1 7 Osa07LNG0528600 17015145-17015418 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa07LNT0528500.1 7 Osa07LNG0528500 17015145-17015418 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa07LNT0528700.1 7 Osa07LNG0528700 17031041-17031277 intergenetic lncRNA (lincRNA) 237 41.35021 1
Osa07LNT0528800.1 7 Osa07LNG0528800 17031793-17032037 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa07LNT0528900.1 7 Osa07LNG0528900 17158573-17158812 intergenetic lncRNA (lincRNA) 240 31.25 1
Osa07LNT0379500.1 7 Osa07LNG0379500 17198555-17209499 long non-coding(lnc) isoforms of known genes 2052 49.02534 15
Osa07LNT0379700.2 7 Osa07LNG0379700 17230466-17245273 long non-coding(lnc) isoforms of known genes 2862 40.7058 14
Osa07LNT0379700.1 7 Osa07LNG0379700 17230466-17245273 long non-coding(lnc) isoforms of known genes 4054 45.2886 23
Osa07LNT0379600.1 7 Osa07LNG0379600 17254973-17260556 long non-coding(lnc) isoforms of known genes 1204 44.93355 8
Osa07LNT0379800.1 7 Osa07LNG0379800 17421280-17425421 long non-coding(lnc) isoforms of known genes 992 48.89113 6
Osa07LNT0379900.2 7 Osa07LNG0379900 17426566-17429414 long non-coding(lnc) isoforms of known genes 982 45.41752 6
Osa07LNT0379900.1 7 Osa07LNG0379900 17426566-17429414 long non-coding(lnc) isoforms of known genes 987 45.39007 6
Osa07LNT0380000.1 7 Osa07LNG0380000 17717318-17717869 intergenetic lncRNA (lincRNA) 552 59.60145 1
Osa07LNT0529000.1 7 Osa07LNG0529000 17757537-17757753 intergenetic lncRNA (lincRNA) 217 40.553 1
Osa07LNT0364500.1 7 Osa07LNG0364500 1780555-1786366 intergenetic lncRNA (lincRNA) 1621 50.03085 2
Osa07LNT0380100.1 7 Osa07LNG0380100 17881210-17887798 long non-coding(lnc) isoforms of known genes 2077 45.64275 14
Osa07LNT0380200.1 7 Osa07LNG0380200 18133138-18135622 long non-coding(lnc) isoforms of known genes 1184 49.23986 4
Osa07LNT0380300.1 7 Osa07LNG0380300 18152427-18154530 intergenetic lncRNA (lincRNA) 876 43.49315 4
Osa07LNT0529100.1 7 Osa07LNG0529100 18168745-18168945 intergenetic lncRNA (lincRNA) 201 49.25373 1
Osa07LNT0380400.1 7 Osa07LNG0380400 18253700-18258019 long non-coding(lnc) isoforms of known genes 1250 50.48 9
Osa07LNT0364600.1 7 Osa07LNG0364600 1832992-1835740 long non-coding(lnc) isoforms of known genes 1175 50.80851 10
Osa07LNT0380500.1 7 Osa07LNG0380500 18338217-18351612 long non-coding(lnc) isoforms of known genes 4216 45.5408 30
Osa07LNT0380600.1 7 Osa07LNG0380600 18466726-18471036 intergenetic lncRNA (lincRNA) 2929 40.76477 4
Osa07LNT0380700.1 7 Osa07LNG0380700 18503251-18506763 long non-coding(lnc) isoforms of known genes 1636 46.63814 8
Osa07LNT0529200.1 7 Osa07LNG0529200 18517274-18517499 intergenetic lncRNA (lincRNA) 226 26.99115 1
Osa07LNT0529300.1 7 Osa07LNG0529300 18517286-18517487 intergenetic lncRNA (lincRNA) 202 25.24752 1
Osa07LNT0380800.1 7 Osa07LNG0380800 18532547-18541191 long non-coding(lnc) isoforms of known genes 769 53.05592 3
Osa07LNT0380900.1 7 Osa07LNG0380900 18625486-18639047 long non-coding(lnc) isoforms of known genes 7194 43.63358 11
Osa07LNT0529400.1 7 Osa07LNG0529400 18760508-18760782 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa07LNT0529500.1 7 Osa07LNG0529500 18760508-18760782 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa07LNT0529600.1 7 Osa07LNG0529600 18888970-18889214 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa07LNT0529700.1 7 Osa07LNG0529700 18888970-18889214 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa07LNT0529800.1 7 Osa07LNG0529800 18889281-18889555 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa07LNT0529900.1 7 Osa07LNG0529900 18889281-18889555 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa07LNT0530000.1 7 Osa07LNG0530000 18889928-18890187 intergenetic lncRNA (lincRNA) 260 41.53846 1
Osa07LNT0530100.1 7 Osa07LNG0530100 18905388-18905665 intronic lncRNA 278 26.97842 1
Osa07LNT0530200.1 7 Osa07LNG0530200 18905388-18905665 intronic lncRNA 278 26.97842 1
Osa07LNT0530300.1 7 Osa07LNG0530300 18965492-18965698 intergenetic lncRNA (lincRNA) 207 47.82609 1
Osa07LNT0530400.1 7 Osa07LNG0530400 18965584-18965786 intergenetic lncRNA (lincRNA) 203 31.52709 1
Osa07LNT0530600.1 7 Osa07LNG0530600 19000695-19000969 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa07LNT0530500.1 7 Osa07LNG0530500 19000695-19000969 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa07LNT0381000.1 7 Osa07LNG0381000 19092421-19094013 intergenetic lncRNA (lincRNA) 501 45.30938 2
Osa07LNT0381100.1 7 Osa07LNG0381100 19252935-19257984 long non-coding(lnc) isoforms of known genes 2837 50.5816 23
Osa07LNT0381200.1 7 Osa07LNG0381200 19271812-19276174 long non-coding(lnc) isoforms of known genes 2594 53.7394 5
Osa07LNT0381300.1 7 Osa07LNG0381300 19310261-19311340 long non-coding(lnc) isoforms of known genes 535 46.72897 4
Osa07LNT0381400.1 7 Osa07LNG0381400 19378880-19386309 long non-coding(lnc) isoforms of known genes 2976 49.05914 10
Osa07LNT0381500.1 7 Osa07LNG0381500 19530211-19534631 sense lncRNA 665 52.33083 2
Osa07LNT0381600.1 7 Osa07LNG0381600 19601499-19602955 intronic lncRNA 443 61.39955 2
Osa07LNT0381700.1 7 Osa07LNG0381700 19615377-19615602 Antisense lncRNA 226 34.51327 1
Osa07LNT0381800.1 7 Osa07LNG0381800 19656083-19662778 long non-coding(lnc) isoforms of known genes 4230 48.62884 7
Osa07LNT0381900.1 7 Osa07LNG0381900 19665002-19665230 intronic lncRNA 229 37.99127 1
Osa07LNT0382000.1 7 Osa07LNG0382000 19737599-19743343 long non-coding(lnc) isoforms of known genes 3894 51.02722 9
Osa07LNT0382100.1 7 Osa07LNG0382100 19926106-19932037 long non-coding(lnc) isoforms of known genes 2660 48.38346 8
Osa07LNT0382200.1 7 Osa07LNG0382200 20087170-20093360 long non-coding(lnc) isoforms of known genes 4125 48.33939 6
Osa07LNT0382300.1 7 Osa07LNG0382300 20115611-20123058 long non-coding(lnc) isoforms of known genes 4111 49.42836 18
Osa07LNT0382400.1 7 Osa07LNG0382400 20164251-20170179 long non-coding(lnc) isoforms of known genes 4764 44.62636 2
Osa07LNT0382500.1 7 Osa07LNG0382500 20277401-20279936 long non-coding(lnc) isoforms of known genes 1661 59.96388 5
Osa07LNT0364800.1 7 Osa07LNG0364800 2029189-2031917 sense lncRNA 508 42.32283 3
Osa07LNT0530700.1 7 Osa07LNG0530700 20498613-20498896 intergenetic lncRNA (lincRNA) 284 27.46479 1
Osa07LNT0530800.1 7 Osa07LNG0530800 20498613-20498896 intergenetic lncRNA (lincRNA) 284 27.46479 1
Osa07LNT0382600.1 7 Osa07LNG0382600 20500413-20501307 intergenetic lncRNA (lincRNA) 895 63.01676 1
Osa07LNT0530900.1 7 Osa07LNG0530900 20536971-20537201 intergenetic lncRNA (lincRNA) 231 32.03463 1
Osa07LNT0531000.1 7 Osa07LNG0531000 20660892-20661164 intergenetic lncRNA (lincRNA) 273 31.86813 1
Osa07LNT0531100.1 7 Osa07LNG0531100 20660892-20661164 intergenetic lncRNA (lincRNA) 273 31.86813 1