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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0364700.1 7 Osa07LNG0364700 2072490-2072898 intergenetic lncRNA (lincRNA) 409 61.12469 1
Osa07LNT0382900.1 7 Osa07LNG0382900 20739506-20749456 long non-coding(lnc) isoforms of known genes 2425 43.6701 16
Osa07LNT0383000.1 7 Osa07LNG0383000 20769109-20772354 long non-coding(lnc) isoforms of known genes 2807 45.17278 3
Osa07LNT0382700.1 7 Osa07LNG0382700 20779452-20780191 intergenetic lncRNA (lincRNA) 494 51.82186 2
Osa07LNT0382800.1 7 Osa07LNG0382800 20786952-20787573 intergenetic lncRNA (lincRNA) 622 50.64309 1
Osa07LNT0383100.1 7 Osa07LNG0383100 20818334-20823891 sense lncRNA 5423 49.99078 2
Osa07LNT0365000.1 7 Osa07LNG0365000 2084109-2091650 long non-coding(lnc) isoforms of known genes 3885 46.04891 15
Osa07LNT0364900.1 7 Osa07LNG0364900 2092773-2093742 sense lncRNA 417 51.31894 2
Osa07LNT0383200.1 7 Osa07LNG0383200 20980091-20982460 intergenetic lncRNA (lincRNA) 453 46.13687 3
Osa07LNT0383300.1 7 Osa07LNG0383300 21133059-21140759 long non-coding(lnc) isoforms of known genes 2478 57.14286 8
Osa07LNT0383400.1 7 Osa07LNG0383400 21280322-21282624 long non-coding(lnc) isoforms of known genes 1928 49.74066 4
Osa07LNT0383500.1 7 Osa07LNG0383500 21315542-21321460 long non-coding(lnc) isoforms of known genes 2694 44.17223 11
Osa07LNT0383600.1 7 Osa07LNG0383600 21368384-21374650 long non-coding(lnc) isoforms of known genes 2098 59.96187 7
Osa07LNT0383700.1 7 Osa07LNG0383700 21384812-21388227 long non-coding(lnc) isoforms of known genes 2308 49.26343 6
Osa07LNT0383800.1 7 Osa07LNG0383800 21392000-21393560 long non-coding(lnc) isoforms of known genes 748 52.00535 4
Osa07LNT0383900.1 7 Osa07LNG0383900 21407976-21411687 long non-coding(lnc) isoforms of known genes 2829 51.96182 6
Osa07LNT0531200.1 7 Osa07LNG0531200 21551165-21551372 intergenetic lncRNA (lincRNA) 208 49.51923 1
Osa07LNT0384000.1 7 Osa07LNG0384000 21668226-21671885 long non-coding(lnc) isoforms of known genes 1764 53.96825 7
Osa07LNT0384100.1 7 Osa07LNG0384100 21674792-21678228 long non-coding(lnc) isoforms of known genes 2253 45.71682 5
Osa07LNT0531400.1 7 Osa07LNG0531400 21794959-21795232 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa07LNT0531300.1 7 Osa07LNG0531300 21794959-21795232 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa07LNT0384200.1 7 Osa07LNG0384200 21846341-21851114 long non-coding(lnc) isoforms of known genes 2751 62.37732 7
Osa07LNT0531500.1 7 Osa07LNG0531500 21876194-21876518 intergenetic lncRNA (lincRNA) 325 52.61538 1
Osa07LNT0531600.1 7 Osa07LNG0531600 21876195-21876516 intergenetic lncRNA (lincRNA) 322 52.48447 1
Osa07LNT0531700.1 7 Osa07LNG0531700 21876202-21876477 intergenetic lncRNA (lincRNA) 276 52.53623 1
Osa07LNT0384300.1 7 Osa07LNG0384300 21935127-21935803 intergenetic lncRNA (lincRNA) 677 53.76662 1
Osa07LNT0384400.1 7 Osa07LNG0384400 21983632-21984012 intergenetic lncRNA (lincRNA) 381 46.19423 1
Osa07LNT0384500.1 7 Osa07LNG0384500 22056455-22059701 long non-coding(lnc) isoforms of known genes 1253 49.32163 5
Osa07LNT0384600.1 7 Osa07LNG0384600 22170680-22171205 long non-coding(lnc) isoforms of known genes 411 65.45012 2
Osa07LNT0365400.2 7 Osa07LNG0365400 2225630-2228192 long non-coding(lnc) isoforms of known genes 1844 42.84165 5
Osa07LNT0365400.1 7 Osa07LNG0365400 2225630-2228192 long non-coding(lnc) isoforms of known genes 1755 42.90598 6
Osa07LNT0384700.1 7 Osa07LNG0384700 22303860-22308711 long non-coding(lnc) isoforms of known genes 2236 48.6136 8
Osa07LNT0365100.1 7 Osa07LNG0365100 2243685-2245723 intergenetic lncRNA (lincRNA) 627 47.6874 3
Osa07LNT0384800.1 7 Osa07LNG0384800 22488828-22498440 long non-coding(lnc) isoforms of known genes 5044 45.04362 23
Osa07LNT0365300.1 7 Osa07LNG0365300 2262223-2267670 intergenetic lncRNA (lincRNA) 853 49.12075 5
Osa07LNT0384900.1 7 Osa07LNG0384900 22634760-22645823 long non-coding(lnc) isoforms of known genes 5757 44.90186 32
Osa07LNT0385000.1 7 Osa07LNG0385000 22654667-22659266 long non-coding(lnc) isoforms of known genes 755 52.45033 7
Osa07LNT0385000.2 7 Osa07LNG0385000 22654667-22659266 long non-coding(lnc) isoforms of known genes 755 52.45033 7
Osa07LNT0385200.1 7 Osa07LNG0385200 22671598-22677668 long non-coding(lnc) isoforms of known genes 3319 46.09822 19
Osa07LNT0385200.2 7 Osa07LNG0385200 22671598-22677668 long non-coding(lnc) isoforms of known genes 3690 45.66396 18
Osa07LNT0385100.1 7 Osa07LNG0385100 22681023-22685990 long non-coding(lnc) isoforms of known genes 1197 63.49206 2
Osa07LNT0385300.1 7 Osa07LNG0385300 22726709-22731186 long non-coding(lnc) isoforms of known genes 1410 60.99291 6
Osa07LNT0365200.1 7 Osa07LNG0365200 2279748-2280902 intergenetic lncRNA (lincRNA) 1155 49.61039 1
Osa07LNT0385400.1 7 Osa07LNG0385400 22798854-22800192 long non-coding(lnc) isoforms of known genes 865 55.0289 5
Osa07LNT0385500.1 7 Osa07LNG0385500 22831863-22837235 long non-coding(lnc) isoforms of known genes 3506 42.41301 5
Osa07LNT0385600.1 7 Osa07LNG0385600 22845061-22849787 long non-coding(lnc) isoforms of known genes 1568 44.06888 7
Osa07LNT0385700.1 7 Osa07LNG0385700 22907887-22908262 intergenetic lncRNA (lincRNA) 376 43.88298 1
Osa07LNT0385800.1 7 Osa07LNG0385800 22997174-23002063 sense lncRNA 751 65.91212 2
Osa07LNT0385900.1 7 Osa07LNG0385900 23010602-23010971 intergenetic lncRNA (lincRNA) 370 60.81081 1
Osa07LNT0386000.1 7 Osa07LNG0386000 23049463-23055637 long non-coding(lnc) isoforms of known genes 4935 53.59676 13
Osa07LNT0386100.2 7 Osa07LNG0386100 23055627-23056439 sense lncRNA 507 61.14398 2
Osa07LNT0386100.1 7 Osa07LNG0386100 23055627-23056439 sense lncRNA 504 60.9127 2
Osa07LNT0386200.1 7 Osa07LNG0386200 23070015-23074573 long non-coding(lnc) isoforms of known genes 1725 44.98551 8
Osa07LNT0386300.1 7 Osa07LNG0386300 23185313-23186925 long non-coding(lnc) isoforms of known genes 1523 43.33552 2
Osa07LNT0386400.1 7 Osa07LNG0386400 23187405-23192344 long non-coding(lnc) isoforms of known genes 1802 44.11765 14
Osa07LNT0386500.1 7 Osa07LNG0386500 23204606-23207034 intergenetic lncRNA (lincRNA) 1341 51.90157 3
Osa07LNT0386600.1 7 Osa07LNG0386600 23217096-23220950 long non-coding(lnc) isoforms of known genes 1144 54.1958 4
Osa07LNT0522200.1 7 Osa07LNG0522200 2340584-2340828 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa07LNT0522300.1 7 Osa07LNG0522300 2340584-2340828 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa07LNT0522400.1 7 Osa07LNG0522400 2340895-2341170 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa07LNT0522500.1 7 Osa07LNG0522500 2340895-2341170 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa07LNT0522600.1 7 Osa07LNG0522600 2341383-2341614 intergenetic lncRNA (lincRNA) 232 40.08621 1
Osa07LNT0386700.1 7 Osa07LNG0386700 23425088-23428908 long non-coding(lnc) isoforms of known genes 3056 46.33508 4
Osa07LNT0531800.1 7 Osa07LNG0531800 23577510-23577771 intergenetic lncRNA (lincRNA) 262 49.61832 1
Osa07LNT0386800.1 7 Osa07LNG0386800 23631830-23642494 long non-coding(lnc) isoforms of known genes 3568 43.75 10
Osa07LNT0386900.1 7 Osa07LNG0386900 23692993-23695480 long non-coding(lnc) isoforms of known genes 2231 43.43344 2
Osa07LNT0522800.1 7 Osa07LNG0522800 2373569-2373843 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa07LNT0522700.1 7 Osa07LNG0522700 2373569-2373843 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa07LNT0387000.1 7 Osa07LNG0387000 23808864-23812497 long non-coding(lnc) isoforms of known genes 1472 52.58152 5
Osa07LNT0387300.1 7 Osa07LNG0387300 23842574-23845455 long non-coding(lnc) isoforms of known genes 2242 49.64318 3
Osa07LNT0387100.1 7 Osa07LNG0387100 23848206-23848568 intergenetic lncRNA (lincRNA) 275 48.36364 2
Osa07LNT0387200.1 7 Osa07LNG0387200 23848789-23849144 intergenetic lncRNA (lincRNA) 356 50.2809 1
Osa07LNT0387400.1 7 Osa07LNG0387400 23896708-23899894 long non-coding(lnc) isoforms of known genes 639 60.71987 3
Osa07LNT0387500.1 7 Osa07LNG0387500 23932111-23935489 sense lncRNA 3201 49.67198 2
Osa07LNT0365500.1 7 Osa07LNG0365500 2400227-2401003 intergenetic lncRNA (lincRNA) 581 48.19277 3
Osa07LNT0387600.3 7 Osa07LNG0387600 24118352-24125221 long non-coding(lnc) isoforms of known genes 2944 42.01766 7
Osa07LNT0387600.1 7 Osa07LNG0387600 24118352-24125221 long non-coding(lnc) isoforms of known genes 2624 43.44512 8
Osa07LNT0387600.2 7 Osa07LNG0387600 24118352-24125221 long non-coding(lnc) isoforms of known genes 2426 43.6521 8
Osa07LNT0387700.1 7 Osa07LNG0387700 24240526-24243837 sense lncRNA 2001 52.07396 2
Osa07LNT0387900.1 7 Osa07LNG0387900 24312094-24315383 long non-coding(lnc) isoforms of known genes 2618 44.99618 3
Osa07LNT0387800.1 7 Osa07LNG0387800 24341172-24341415 intergenetic lncRNA (lincRNA) 244 73.36066 1
Osa07LNT0388000.1 7 Osa07LNG0388000 24429316-24432826 long non-coding(lnc) isoforms of known genes 1829 48.49645 7
Osa07LNT0388100.1 7 Osa07LNG0388100 24493726-24497549 long non-coding(lnc) isoforms of known genes 1534 51.1734 14
Osa07LNT0388200.2 7 Osa07LNG0388200 24580091-24584400 long non-coding(lnc) isoforms of known genes 1863 51.47611 10
Osa07LNT0388200.1 7 Osa07LNG0388200 24580091-24584400 long non-coding(lnc) isoforms of known genes 1679 52.70995 11
Osa07LNT0365600.1 7 Osa07LNG0365600 2464267-2465744 Antisense lncRNA 1036 42.18147 3
Osa07LNT0388300.1 7 Osa07LNG0388300 24796286-24800235 intergenetic lncRNA (lincRNA) 3624 43.79139 2
Osa07LNT0388400.1 7 Osa07LNG0388400 24904705-24905304 intronic lncRNA 600 63.16667 1
Osa07LNT0388500.1 7 Osa07LNG0388500 24996763-25001214 long non-coding(lnc) isoforms of known genes 2686 43.1869 6
Osa07LNT0531900.1 7 Osa07LNG0531900 25146924-25147136 intergenetic lncRNA (lincRNA) 213 48.35681 1
Osa07LNT0388600.1 7 Osa07LNG0388600 25213823-25214483 intergenetic lncRNA (lincRNA) 570 48.07018 2
Osa07LNT0388700.1 7 Osa07LNG0388700 25569076-25571773 long non-coding(lnc) isoforms of known genes 876 41.89498 4
Osa07LNT0388800.1 7 Osa07LNG0388800 25611983-25616341 long non-coding(lnc) isoforms of known genes 1907 50.5506 8
Osa07LNT0388800.2 7 Osa07LNG0388800 25611983-25616341 long non-coding(lnc) isoforms of known genes 1967 50.02542 7
Osa07LNT0388900.1 7 Osa07LNG0388900 25645996-25649158 long non-coding(lnc) isoforms of known genes 1675 43.70149 6
Osa07LNT0389200.1 7 Osa07LNG0389200 25679840-25688015 long non-coding(lnc) isoforms of known genes 6376 41.68758 5
Osa07LNT0389200.2 7 Osa07LNG0389200 25679840-25688015 long non-coding(lnc) isoforms of known genes 6129 41.06706 4
Osa07LNT0365700.1 7 Osa07LNG0365700 2568155-2570723 long non-coding(lnc) isoforms of known genes 545 55.77982 4
Osa07LNT0389000.1 7 Osa07LNG0389000 25691710-25694713 intergenetic lncRNA (lincRNA) 994 46.37827 5
Osa07LNT0389100.1 7 Osa07LNG0389100 25696895-25704080 long non-coding(lnc) isoforms of known genes 2114 53.12204 8