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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0474700.1 2 Osa02LNG0474700 7973039-7973284 intergenetic lncRNA (lincRNA) 246 25.60976 1
Osa02LNT0154700.2 2 Osa02LNG0154700 7991943-7996772 long non-coding(lnc) isoforms of known genes 2348 46.03918 9
Osa02LNT0154700.1 2 Osa02LNG0154700 7991943-7996772 long non-coding(lnc) isoforms of known genes 2782 44.17685 9
Osa02LNT0154800.1 2 Osa02LNG0154800 7998325-8002599 intergenetic lncRNA (lincRNA) 3950 42.98734 4
Osa02LNT0474800.1 2 Osa02LNG0474800 8196351-8196574 intergenetic lncRNA (lincRNA) 224 37.5 1
Osa02LNT0474900.1 2 Osa02LNG0474900 8231317-8231560 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa02LNT0475000.1 2 Osa02LNG0475000 8231317-8231560 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa02LNT0475100.1 2 Osa02LNG0475100 8231627-8231871 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa02LNT0154900.1 2 Osa02LNG0154900 8232000-8232941 intergenetic lncRNA (lincRNA) 942 59.97877 1
Osa02LNT0155000.1 2 Osa02LNG0155000 8251528-8254272 intergenetic lncRNA (lincRNA) 652 43.25153 2
Osa02LNT0155100.2 2 Osa02LNG0155100 8518517-8535707 Antisense lncRNA 1490 44.69799 8
Osa02LNT0155100.1 2 Osa02LNG0155100 8518517-8535707 Antisense lncRNA 1575 44.25397 7
Osa02LNT0140700.2 2 Osa02LNG0140700 853795-859876 long non-coding(lnc) isoforms of known genes 1566 44.69987 7
Osa02LNT0140700.1 2 Osa02LNG0140700 853795-859876 long non-coding(lnc) isoforms of known genes 1714 44.69078 8
Osa02LNT0155200.1 2 Osa02LNG0155200 8553961-8558162 long non-coding(lnc) isoforms of known genes 2134 45.54827 7
Osa02LNT0139400.1 2 Osa02LNG0139400 86724-91573 long non-coding(lnc) isoforms of known genes 2928 43.30601 11
Osa02LNT0155300.1 2 Osa02LNG0155300 8700431-8703157 sense lncRNA 2249 44.81992 2
Osa02LNT0155400.1 2 Osa02LNG0155400 8726689-8730601 long non-coding(lnc) isoforms of known genes 1562 49.80794 12
Osa02LNT0155500.1 2 Osa02LNG0155500 8747058-8755901 long non-coding(lnc) isoforms of known genes 2825 43.82301 8
Osa02LNT0155600.1 2 Osa02LNG0155600 8810104-8820953 long non-coding(lnc) isoforms of known genes 6098 47.09741 23
Osa02LNT0155700.1 2 Osa02LNG0155700 8875346-8875545 Antisense lncRNA 200 57.5 1
Osa02LNT0155800.1 2 Osa02LNG0155800 8976813-8981094 long non-coding(lnc) isoforms of known genes 1778 45.89426 8
Osa02LNT0155900.1 2 Osa02LNG0155900 9005264-9007478 long non-coding(lnc) isoforms of known genes 1465 48.3959 4
Osa02LNT0475200.1 2 Osa02LNG0475200 9051971-9052222 intergenetic lncRNA (lincRNA) 252 24.20635 1
Osa02LNT0475300.1 2 Osa02LNG0475300 9099744-9099943 intergenetic lncRNA (lincRNA) 200 35.0 1
Osa02LNT0139500.1 2 Osa02LNG0139500 92792-93560 Antisense lncRNA 300 43.33333 3
Osa02LNT0140800.1 2 Osa02LNG0140800 930302-934270 long non-coding(lnc) isoforms of known genes 2454 48.73676 7
Osa02LNT0140900.1 2 Osa02LNG0140900 934683-937771 long non-coding(lnc) isoforms of known genes 1451 59.54514 4
Osa02LNT0139600.1 2 Osa02LNG0139600 93621-96474 Antisense lncRNA 1212 57.50825 6
Osa02LNT0156000.1 2 Osa02LNG0156000 9458279-9463658 long non-coding(lnc) isoforms of known genes 1057 55.62914 4
Osa02LNT0475400.1 2 Osa02LNG0475400 9782519-9782772 intergenetic lncRNA (lincRNA) 254 28.34646 1
Osa02LNT0139300.2 2 Osa02LNG0139300 98001-107379 long non-coding(lnc) isoforms of known genes 2559 41.42243 21
Osa02LNT0139300.1 2 Osa02LNG0139300 98001-107379 long non-coding(lnc) isoforms of known genes 2676 42.18984 23
Osa02LNT0156100.1 2 Osa02LNG0156100 9917022-9928340 long non-coding(lnc) isoforms of known genes 8270 46.89238 5
Osa02LNT0156200.1 2 Osa02LNG0156200 9928936-9937374 long non-coding(lnc) isoforms of known genes 1960 44.79592 16
Osa02LNT0156300.1 2 Osa02LNG0156300 9981667-9985833 long non-coding(lnc) isoforms of known genes 2493 50.14039 7
Osa03LNT0208200.2 3 Osa03LNG0208200 10090151-10097850 long non-coding(lnc) isoforms of known genes 2579 44.97867 19
Osa03LNT0208200.1 3 Osa03LNG0208200 10090151-10097850 long non-coding(lnc) isoforms of known genes 2607 44.99425 19
Osa03LNT0208300.1 3 Osa03LNG0208300 10120289-10124384 long non-coding(lnc) isoforms of known genes 2744 58.27259 12
Osa03LNT0208400.1 3 Osa03LNG0208400 10191644-10200058 long non-coding(lnc) isoforms of known genes 3687 39.38161 16
Osa03LNT0208500.4 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3950 39.79747 6
Osa03LNT0208500.3 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3610 38.94737 8
Osa03LNT0208500.2 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3612 42.41417 10
Osa03LNT0208500.1 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3987 41.25909 10
Osa03LNT0208600.2 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 3034 42.48517 5
Osa03LNT0208600.1 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 3116 42.42619 4
Osa03LNT0208600.3 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 1678 49.46365 7
Osa03LNT0194400.1 3 Osa03LNG0194400 1027590-1031440 long non-coding(lnc) isoforms of known genes 2888 52.56233 9
Osa03LNT0208700.1 3 Osa03LNG0208700 10298989-10305409 long non-coding(lnc) isoforms of known genes 3742 46.84661 6
Osa03LNT0208800.1 3 Osa03LNG0208800 10320222-10324794 long non-coding(lnc) isoforms of known genes 1940 45.30928 8