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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0389300.1 7 Osa07LNG0389300 25776199-25783534 long non-coding(lnc) isoforms of known genes 3424 45.61916 13
Osa07LNT0389400.1 7 Osa07LNG0389400 25839984-25843912 long non-coding(lnc) isoforms of known genes 2626 41.96497 5
Osa07LNT0389500.1 7 Osa07LNG0389500 25958866-25963652 long non-coding(lnc) isoforms of known genes 1656 49.45652 8
Osa07LNT0389600.1 7 Osa07LNG0389600 26075493-26077145 long non-coding(lnc) isoforms of known genes 1560 61.73077 2
Osa07LNT0389700.1 7 Osa07LNG0389700 26245519-26250770 long non-coding(lnc) isoforms of known genes 2608 49.04141 10
Osa07LNT0389700.2 7 Osa07LNG0389700 26245519-26250770 long non-coding(lnc) isoforms of known genes 3244 45.80764 10
Osa07LNT0389700.3 7 Osa07LNG0389700 26245519-26250770 long non-coding(lnc) isoforms of known genes 2099 49.30919 11
Osa07LNT0389800.1 7 Osa07LNG0389800 26292464-26296167 long non-coding(lnc) isoforms of known genes 1517 55.96572 6
Osa07LNT0389900.1 7 Osa07LNG0389900 26325130-26326632 long non-coding(lnc) isoforms of known genes 1145 60.08734 3
Osa07LNT0389900.2 7 Osa07LNG0389900 26325130-26326632 sense lncRNA 944 56.88559 3
Osa07LNT0365800.1 7 Osa07LNG0365800 2634435-2640489 long non-coding(lnc) isoforms of known genes 3346 46.68261 7
Osa07LNT0390000.1 7 Osa07LNG0390000 26387847-26389928 sense lncRNA 1206 53.89718 2
Osa07LNT0522900.1 7 Osa07LNG0522900 2640876-2641079 intergenetic lncRNA (lincRNA) 204 26.96078 1
Osa07LNT0365900.1 7 Osa07LNG0365900 2643556-2647773 long non-coding(lnc) isoforms of known genes 1872 49.78632 14
Osa07LNT0390100.1 7 Osa07LNG0390100 26481502-26485166 long non-coding(lnc) isoforms of known genes 1830 47.3224 6
Osa07LNT0390200.1 7 Osa07LNG0390200 26527934-26533944 long non-coding(lnc) isoforms of known genes 3765 39.8672 13
Osa07LNT0390300.1 7 Osa07LNG0390300 26618661-26622023 long non-coding(lnc) isoforms of known genes 2476 43.69952 4
Osa07LNT0390400.1 7 Osa07LNG0390400 26631395-26633686 long non-coding(lnc) isoforms of known genes 1107 50.4065 7
Osa07LNT0390500.1 7 Osa07LNG0390500 26677080-26680473 long non-coding(lnc) isoforms of known genes 1647 46.38737 6
Osa07LNT0390500.2 7 Osa07LNG0390500 26677080-26680473 long non-coding(lnc) isoforms of known genes 1649 46.33111 6
Osa07LNT0390600.2 7 Osa07LNG0390600 26708500-26711918 long non-coding(lnc) isoforms of known genes 1210 40.33058 6
Osa07LNT0390600.1 7 Osa07LNG0390600 26708500-26711918 long non-coding(lnc) isoforms of known genes 687 51.96507 6
Osa07LNT0390700.2 7 Osa07LNG0390700 26719124-26727227 long non-coding(lnc) isoforms of known genes 2426 40.23083 12
Osa07LNT0390700.1 7 Osa07LNG0390700 26719124-26727227 long non-coding(lnc) isoforms of known genes 2866 45.67341 16
Osa07LNT0523000.1 7 Osa07LNG0523000 2675549-2675773 intergenetic lncRNA (lincRNA) 225 26.66667 1
Osa07LNT0390800.1 7 Osa07LNG0390800 26886336-26908536 long non-coding(lnc) isoforms of known genes 12113 44.4316 36
Osa07LNT0390900.1 7 Osa07LNG0390900 26918373-26923890 long non-coding(lnc) isoforms of known genes 1619 58.8635 3
Osa07LNT0391000.3 7 Osa07LNG0391000 26962931-26967260 long non-coding(lnc) isoforms of known genes 1940 61.13402 4
Osa07LNT0391000.1 7 Osa07LNG0391000 26962931-26967260 long non-coding(lnc) isoforms of known genes 1955 60.92072 5
Osa07LNT0391000.2 7 Osa07LNG0391000 26962931-26967260 sense lncRNA 4084 49.11851 4
Osa07LNT0391100.1 7 Osa07LNG0391100 26978363-26983862 long non-coding(lnc) isoforms of known genes 2839 41.35259 3
Osa07LNT0391200.1 7 Osa07LNG0391200 27029455-27035256 long non-coding(lnc) isoforms of known genes 1578 47.3384 12
Osa07LNT0391300.2 7 Osa07LNG0391300 27050884-27054775 long non-coding(lnc) isoforms of known genes 1519 48.51876 12
Osa07LNT0391300.1 7 Osa07LNG0391300 27050884-27054775 long non-coding(lnc) isoforms of known genes 1614 48.57497 11
Osa07LNT0366000.2 7 Osa07LNG0366000 2711540-2713072 intergenetic lncRNA (lincRNA) 682 53.07918 3
Osa07LNT0366000.1 7 Osa07LNG0366000 2711540-2713072 intergenetic lncRNA (lincRNA) 843 51.60142 3
Osa07LNT0366100.1 7 Osa07LNG0366100 2727005-2730136 long non-coding(lnc) isoforms of known genes 1802 57.43618 2
Osa07LNT0391400.1 7 Osa07LNG0391400 27459323-27459544 intergenetic lncRNA (lincRNA) 222 46.3964 1
Osa07LNT0391500.1 7 Osa07LNG0391500 27465245-27466108 intergenetic lncRNA (lincRNA) 780 52.4359 2
Osa07LNT0391600.1 7 Osa07LNG0391600 27701512-27705200 long non-coding(lnc) isoforms of known genes 1229 46.786 9
Osa07LNT0391700.2 7 Osa07LNG0391700 27774777-27777989 sense lncRNA 871 49.48335 7
Osa07LNT0391700.1 7 Osa07LNG0391700 27774777-27777989 sense lncRNA 886 49.43567 7
Osa07LNT0391800.1 7 Osa07LNG0391800 27791113-27798140 long non-coding(lnc) isoforms of known genes 4432 42.84747 15
Osa07LNT0391900.1 7 Osa07LNG0391900 27823831-27824495 sense lncRNA 466 44.4206 2
Osa07LNT0392000.1 7 Osa07LNG0392000 27841401-27845395 long non-coding(lnc) isoforms of known genes 1995 48.92231 9
Osa07LNT0392100.1 7 Osa07LNG0392100 27868843-27876569 long non-coding(lnc) isoforms of known genes 3230 44.73684 10
Osa07LNT0392200.1 7 Osa07LNG0392200 27902457-27912642 sense lncRNA 6859 45.82301 10
Osa07LNT0392400.1 7 Osa07LNG0392400 27915306-27921192 long non-coding(lnc) isoforms of known genes 1717 45.71928 6
Osa07LNT0392400.2 7 Osa07LNG0392400 27915306-27921192 long non-coding(lnc) isoforms of known genes 1029 48.49368 6
Osa07LNT0392300.1 7 Osa07LNG0392300 27922793-27924603 long non-coding(lnc) isoforms of known genes 756 44.31217 4
Osa07LNT0392500.1 7 Osa07LNG0392500 27929713-27933923 long non-coding(lnc) isoforms of known genes 1519 50.23041 2
Osa07LNT0392600.1 7 Osa07LNG0392600 27950941-27957461 long non-coding(lnc) isoforms of known genes 1775 46.70423 13
Osa07LNT0366400.1 7 Osa07LNG0366400 2795894-2796442 intronic lncRNA 447 32.21477 2
Osa07LNT0392700.1 7 Osa07LNG0392700 27975416-27976660 intergenetic lncRNA (lincRNA) 1245 36.14458 1
Osa07LNT0392800.1 7 Osa07LNG0392800 27983248-27988165 long non-coding(lnc) isoforms of known genes 2230 46.59193 10
Osa07LNT0392800.2 7 Osa07LNG0392800 27983248-27988165 long non-coding(lnc) isoforms of known genes 2160 46.94444 11
Osa07LNT0366200.1 7 Osa07LNG0366200 2801625-2804332 long non-coding(lnc) isoforms of known genes 1215 54.97942 2
Osa07LNT0392900.1 7 Osa07LNG0392900 28140979-28143782 long non-coding(lnc) isoforms of known genes 1059 44.94806 5
Osa07LNT0393000.1 7 Osa07LNG0393000 28146509-28149601 long non-coding(lnc) isoforms of known genes 1276 50.94044 3
Osa07LNT0366300.1 7 Osa07LNG0366300 2819056-2823109 long non-coding(lnc) isoforms of known genes 1515 48.77888 5
Osa07LNT0393100.1 7 Osa07LNG0393100 28238948-28239547 intergenetic lncRNA (lincRNA) 600 57.66667 1
Osa07LNT0393200.3 7 Osa07LNG0393200 28391722-28400306 long non-coding(lnc) isoforms of known genes 3494 45.07728 6
Osa07LNT0393200.1 7 Osa07LNG0393200 28391722-28400306 long non-coding(lnc) isoforms of known genes 3386 44.86119 5
Osa07LNT0393200.2 7 Osa07LNG0393200 28391722-28400306 long non-coding(lnc) isoforms of known genes 5476 41.96494 5
Osa07LNT0393300.1 7 Osa07LNG0393300 28469782-28474153 long non-coding(lnc) isoforms of known genes 1842 47.82845 15
Osa07LNT0393400.2 7 Osa07LNG0393400 28584875-28593347 long non-coding(lnc) isoforms of known genes 1875 45.01333 10
Osa07LNT0393400.1 7 Osa07LNG0393400 28584875-28593347 long non-coding(lnc) isoforms of known genes 1694 45.27745 10
Osa07LNT0393500.1 7 Osa07LNG0393500 28631211-28638569 long non-coding(lnc) isoforms of known genes 1934 46.6908 12
Osa07LNT0393500.3 7 Osa07LNG0393500 28631211-28638569 long non-coding(lnc) isoforms of known genes 2017 46.7526 13
Osa07LNT0393500.2 7 Osa07LNG0393500 28631211-28638569 long non-coding(lnc) isoforms of known genes 2374 45.07161 11
Osa07LNT0393500.4 7 Osa07LNG0393500 28631211-28638569 long non-coding(lnc) isoforms of known genes 2398 45.20434 11
Osa07LNT0393600.1 7 Osa07LNG0393600 28734807-28738454 intergenetic lncRNA (lincRNA) 1616 45.97772 4
Osa07LNT0393700.1 7 Osa07LNG0393700 28741888-28745900 long non-coding(lnc) isoforms of known genes 2705 57.07948 10
Osa07LNT0393800.1 7 Osa07LNG0393800 28786471-28793002 long non-coding(lnc) isoforms of known genes 3470 49.39481 11
Osa07LNT0366500.1 7 Osa07LNG0366500 2882846-2892741 long non-coding(lnc) isoforms of known genes 4757 47.31974 30
Osa07LNT0393900.1 7 Osa07LNG0393900 28832616-28844860 long non-coding(lnc) isoforms of known genes 5782 44.3964 19
Osa07LNT0393900.3 7 Osa07LNG0393900 28832616-28844860 long non-coding(lnc) isoforms of known genes 7129 42.46037 17
Osa07LNT0393900.2 7 Osa07LNG0393900 28832616-28844860 long non-coding(lnc) isoforms of known genes 5975 44.31799 19
Osa07LNT0394000.1 7 Osa07LNG0394000 28855815-28857268 Antisense lncRNA 273 59.34066 2
Osa07LNT0394100.1 7 Osa07LNG0394100 29029656-29031020 long non-coding(lnc) isoforms of known genes 1268 52.05047 2
Osa07LNT0394200.1 7 Osa07LNG0394200 29077209-29081165 long non-coding(lnc) isoforms of known genes 1936 48.34711 3
Osa07LNT0394300.1 7 Osa07LNG0394300 29112296-29120708 sense lncRNA 1565 44.15335 2
Osa07LNT0394400.1 7 Osa07LNG0394400 29247849-29251961 long non-coding(lnc) isoforms of known genes 2430 48.39506 11
Osa07LNT0394500.1 7 Osa07LNG0394500 29342848-29348450 long non-coding(lnc) isoforms of known genes 4339 44.27287 6
Osa07LNT0394600.1 7 Osa07LNG0394600 29353061-29357302 long non-coding(lnc) isoforms of known genes 2963 50.52312 3
Osa07LNT0394700.1 7 Osa07LNG0394700 29512230-29516331 long non-coding(lnc) isoforms of known genes 2155 59.9536 3
Osa07LNT0394900.1 7 Osa07LNG0394900 29666450-29682768 long non-coding(lnc) isoforms of known genes 2501 38.66453 8
Osa07LNT0394900.3 7 Osa07LNG0394900 29666450-29682768 long non-coding(lnc) isoforms of known genes 1482 43.25236 7
Osa07LNT0394900.2 7 Osa07LNG0394900 29666450-29682768 long non-coding(lnc) isoforms of known genes 1562 43.14981 6
Osa07LNT0366600.1 7 Osa07LNG0366600 3122638-3124597 long non-coding(lnc) isoforms of known genes 1509 55.53347 3
Osa07LNT0366700.3 7 Osa07LNG0366700 3153597-3157207 long non-coding(lnc) isoforms of known genes 2050 47.7561 6
Osa07LNT0366700.2 7 Osa07LNG0366700 3153597-3157207 long non-coding(lnc) isoforms of known genes 2223 46.15385 6
Osa07LNT0366700.1 7 Osa07LNG0366700 3153597-3157207 long non-coding(lnc) isoforms of known genes 2312 45.84775 6
Osa07LNT0366800.1 7 Osa07LNG0366800 3168032-3170244 long non-coding(lnc) isoforms of known genes 1175 40.85106 2
Osa07LNT0366900.1 7 Osa07LNG0366900 3270410-3275905 long non-coding(lnc) isoforms of known genes 2563 46.11783 9
Osa07LNT0367000.2 7 Osa07LNG0367000 3363008-3369891 long non-coding(lnc) isoforms of known genes 2065 47.2155 18
Osa07LNT0367000.1 7 Osa07LNG0367000 3363008-3369891 long non-coding(lnc) isoforms of known genes 2072 47.15251 18
Osa07LNT0367100.1 7 Osa07LNG0367100 3429464-3434780 long non-coding(lnc) isoforms of known genes 3310 46.52568 9
Osa07LNT0367200.1 7 Osa07LNG0367200 3471834-3478877 long non-coding(lnc) isoforms of known genes 4489 48.38494 10
Osa07LNT0367300.1 7 Osa07LNG0367300 3491992-3499214 long non-coding(lnc) isoforms of known genes 4275 45.30994 12