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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0045300.1 1 Osa01LNG0045300 35756464-35758719 long non-coding(lnc) isoforms of known genes 1026 51.36452 8
Osa01LNT0045400.1 1 Osa01LNG0045400 35839404-35839614 intergenetic lncRNA (lincRNA) 211 36.49289 1
Osa01LNT0004400.1 1 Osa01LNG0004400 3591827-3596094 long non-coding(lnc) isoforms of known genes 3060 49.24837 2
Osa01LNT0045500.1 1 Osa01LNG0045500 35933767-35934589 intergenetic lncRNA (lincRNA) 823 34.02187 1
Osa01LNT0045700.1 1 Osa01LNG0045700 36017376-36020799 long non-coding(lnc) isoforms of known genes 2183 38.79982 3
Osa01LNT0045600.1 1 Osa01LNG0045600 36083073-36085695 long non-coding(lnc) isoforms of known genes 631 50.07924 4
Osa01LNT0045800.1 1 Osa01LNG0045800 36105408-36110746 long non-coding(lnc) isoforms of known genes 2127 45.41608 10
Osa01LNT0461700.1 1 Osa01LNG0461700 36121057-36121283 intergenetic lncRNA (lincRNA) 227 26.87225 1
Osa01LNT0045900.2 1 Osa01LNG0045900 36138757-36146318 long non-coding(lnc) isoforms of known genes 3036 45.5863 14
Osa01LNT0045900.1 1 Osa01LNG0045900 36138757-36146318 long non-coding(lnc) isoforms of known genes 3033 45.59842 14
Osa01LNT0046000.1 1 Osa01LNG0046000 36248627-36249231 sense lncRNA 532 61.2782 2
Osa01LNT0046100.1 1 Osa01LNG0046100 36325404-36336607 long non-coding(lnc) isoforms of known genes 7593 44.64638 22
Osa01LNT0046100.2 1 Osa01LNG0046100 36325404-36336607 long non-coding(lnc) isoforms of known genes 2780 48.1295 21
Osa01LNT0046200.1 1 Osa01LNG0046200 36385616-36389449 long non-coding(lnc) isoforms of known genes 1967 41.53533 7
Osa01LNT0046200.2 1 Osa01LNG0046200 36385616-36389449 long non-coding(lnc) isoforms of known genes 2007 41.35526 7
Osa01LNT0046300.1 1 Osa01LNG0046300 36386047-36390354 long non-coding(lnc) isoforms of known genes 2593 47.89819 6
Osa01LNT0046400.1 1 Osa01LNG0046400 36445451-36448046 long non-coding(lnc) isoforms of known genes 2489 46.56489 2
Osa01LNT0046500.1 1 Osa01LNG0046500 36498458-36500636 intergenetic lncRNA (lincRNA) 570 43.85965 3
Osa01LNT0046600.1 1 Osa01LNG0046600 36534873-36537212 intergenetic lncRNA (lincRNA) 658 44.07295 2
Osa01LNT0046700.1 1 Osa01LNG0046700 36597719-36600524 long non-coding(lnc) isoforms of known genes 1178 56.96095 3
Osa01LNT0046800.1 1 Osa01LNG0046800 36643577-36647697 long non-coding(lnc) isoforms of known genes 2273 46.6344 8
Osa01LNT0046900.1 1 Osa01LNG0046900 36718089-36723110 long non-coding(lnc) isoforms of known genes 1544 52.84974 4
Osa01LNT0047000.1 1 Osa01LNG0047000 36736127-36737198 long non-coding(lnc) isoforms of known genes 739 46.27876 3
Osa01LNT0004500.1 1 Osa01LNG0004500 3696155-3699718 long non-coding(lnc) isoforms of known genes 1586 48.0454 10
Osa01LNT0047200.2 1 Osa01LNG0047200 37023827-37031493 long non-coding(lnc) isoforms of known genes 2792 48.81805 16
Osa01LNT0047200.1 1 Osa01LNG0047200 37023827-37031493 long non-coding(lnc) isoforms of known genes 2678 47.57282 16
Osa01LNT0047100.1 1 Osa01LNG0047100 37039556-37043202 long non-coding(lnc) isoforms of known genes 2210 45.11312 9
Osa01LNT0004600.1 1 Osa01LNG0004600 3705424-3708989 long non-coding(lnc) isoforms of known genes 1634 46.20563 13
Osa01LNT0047300.1 1 Osa01LNG0047300 37080268-37083368 long non-coding(lnc) isoforms of known genes 1169 43.28486 10
Osa01LNT0004800.1 1 Osa01LNG0004800 3713740-3718631 long non-coding(lnc) isoforms of known genes 2710 49.5941 14
Osa01LNT0047400.1 1 Osa01LNG0047400 37190475-37197744 long non-coding(lnc) isoforms of known genes 2273 46.23845 3
Osa01LNT0004700.1 1 Osa01LNG0004700 3720138-3723145 long non-coding(lnc) isoforms of known genes 1669 44.45776 4
Osa01LNT0047500.1 1 Osa01LNG0047500 37417036-37423391 sense lncRNA 3555 46.18847 15
Osa01LNT0047600.1 1 Osa01LNG0047600 37525983-37529093 long non-coding(lnc) isoforms of known genes 1785 49.13165 5
Osa01LNT0047700.2 1 Osa01LNG0047700 37556707-37560104 long non-coding(lnc) isoforms of known genes 2392 52.46656 3
Osa01LNT0047700.1 1 Osa01LNG0047700 37556707-37560104 long non-coding(lnc) isoforms of known genes 2549 50.80424 3
Osa01LNT0047800.1 1 Osa01LNG0047800 37584891-37588102 long non-coding(lnc) isoforms of known genes 1348 46.51335 7
Osa01LNT0047900.1 1 Osa01LNG0047900 37655471-37661226 long non-coding(lnc) isoforms of known genes 2772 48.01587 11
Osa01LNT0048100.1 1 Osa01LNG0048100 37667513-37678038 long non-coding(lnc) isoforms of known genes 2813 39.99289 22
Osa01LNT0048000.1 1 Osa01LNG0048000 37688093-37689341 long non-coding(lnc) isoforms of known genes 716 49.02235 4
Osa01LNT0048200.1 1 Osa01LNG0048200 37898963-37906732 long non-coding(lnc) isoforms of known genes 2872 50.27855 12
Osa01LNT0048300.1 1 Osa01LNG0048300 37914774-37918916 long non-coding(lnc) isoforms of known genes 1934 50.62048 5
Osa01LNT0048400.1 1 Osa01LNG0048400 38055662-38058030 intergenetic lncRNA (lincRNA) 1061 52.7804 4
Osa01LNT0461800.1 1 Osa01LNG0461800 38125864-38126137 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa01LNT0461900.1 1 Osa01LNG0461900 38125864-38126137 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa01LNT0048500.1 1 Osa01LNG0048500 38157319-38159769 long non-coding(lnc) isoforms of known genes 1725 50.49275 6
Osa01LNT0004900.1 1 Osa01LNG0004900 3827072-3830326 long non-coding(lnc) isoforms of known genes 1139 42.8446 7
Osa01LNT0048600.1 1 Osa01LNG0048600 38275062-38279030 long non-coding(lnc) isoforms of known genes 1496 53.40909 5
Osa01LNT0048700.1 1 Osa01LNG0048700 38282607-38287185 sense lncRNA 2646 51.70068 9
Osa01LNT0048800.1 1 Osa01LNG0048800 38431286-38433698 sense lncRNA 1318 59.78756 2
Osa01LNT0048900.1 1 Osa01LNG0048900 38437193-38440464 long non-coding(lnc) isoforms of known genes 1295 57.14286 7
Osa01LNT0049000.1 1 Osa01LNG0049000 38491273-38494120 long non-coding(lnc) isoforms of known genes 2043 46.20656 2
Osa01LNT0049100.1 1 Osa01LNG0049100 38517646-38520243 long non-coding(lnc) isoforms of known genes 2326 45.5718 2
Osa01LNT0049200.1 1 Osa01LNG0049200 38566225-38570801 long non-coding(lnc) isoforms of known genes 1157 53.15471 5
Osa01LNT0005000.2 1 Osa01LNG0005000 3858613-3874318 long non-coding(lnc) isoforms of known genes 1318 43.85432 6
Osa01LNT0005000.1 1 Osa01LNG0005000 3858613-3874318 long non-coding(lnc) isoforms of known genes 2103 48.40704 13
Osa01LNT0462000.1 1 Osa01LNG0462000 38596209-38596477 intergenetic lncRNA (lincRNA) 269 24.90706 1
Osa01LNT0462100.1 1 Osa01LNG0462100 38596209-38596477 intergenetic lncRNA (lincRNA) 269 24.90706 1
Osa01LNT0049400.1 1 Osa01LNG0049400 38632744-38633545 long non-coding(lnc) isoforms of known genes 702 37.46439 2
Osa01LNT0049300.2 1 Osa01LNG0049300 38659397-38663607 long non-coding(lnc) isoforms of known genes 3393 40.76039 9
Osa01LNT0049300.1 1 Osa01LNG0049300 38659397-38663607 long non-coding(lnc) isoforms of known genes 3421 40.77755 9
Osa01LNT0049500.1 1 Osa01LNG0049500 38684636-38688097 long non-coding(lnc) isoforms of known genes 1862 48.97959 3
Osa01LNT0005100.1 1 Osa01LNG0005100 3880006-3880948 long non-coding(lnc) isoforms of known genes 473 44.8203 2
Osa01LNT0049600.2 1 Osa01LNG0049600 38800613-38804004 intergenetic lncRNA (lincRNA) 1681 49.07793 12
Osa01LNT0049600.1 1 Osa01LNG0049600 38800613-38804004 intergenetic lncRNA (lincRNA) 1669 49.0713 12
Osa01LNT0049700.1 1 Osa01LNG0049700 38885152-38887709 long non-coding(lnc) isoforms of known genes 1460 56.09589 3
Osa01LNT0049800.1 1 Osa01LNG0049800 38900613-38902710 long non-coding(lnc) isoforms of known genes 1028 46.88716 7
Osa01LNT0049900.1 1 Osa01LNG0049900 38930465-38934752 long non-coding(lnc) isoforms of known genes 1698 46.11307 14
Osa01LNT0050000.1 1 Osa01LNG0050000 38991071-38993773 long non-coding(lnc) isoforms of known genes 1252 51.27796 8
Osa01LNT0050100.1 1 Osa01LNG0050100 38994476-38997687 long non-coding(lnc) isoforms of known genes 1819 46.01429 8
Osa01LNT0050300.1 1 Osa01LNG0050300 39013826-39016931 sense lncRNA 2336 55.17979 4
Osa01LNT0050200.1 1 Osa01LNG0050200 39017626-39018059 intergenetic lncRNA (lincRNA) 434 54.37788 1
Osa01LNT0050400.2 1 Osa01LNG0050400 39102277-39105351 long non-coding(lnc) isoforms of known genes 1909 50.18334 6
Osa01LNT0050400.1 1 Osa01LNG0050400 39102277-39105351 long non-coding(lnc) isoforms of known genes 1919 50.13028 6
Osa01LNT0050500.1 1 Osa01LNG0050500 39129784-39134767 long non-coding(lnc) isoforms of known genes 3592 39.42094 12
Osa01LNT0050600.1 1 Osa01LNG0050600 39216719-39218757 long non-coding(lnc) isoforms of known genes 733 50.20464 6
Osa01LNT0050700.1 1 Osa01LNG0050700 39238851-39243943 long non-coding(lnc) isoforms of known genes 2655 43.76648 7
Osa01LNT0050800.1 1 Osa01LNG0050800 39270573-39274992 long non-coding(lnc) isoforms of known genes 2225 53.79775 12
Osa01LNT0050900.1 1 Osa01LNG0050900 39357593-39362775 long non-coding(lnc) isoforms of known genes 1712 47.60514 12
Osa01LNT0454600.1 1 Osa01LNG0454600 3935958-3936194 intergenetic lncRNA (lincRNA) 237 27.00422 1
Osa01LNT0051000.1 1 Osa01LNG0051000 39374936-39379545 long non-coding(lnc) isoforms of known genes 2774 46.53929 8
Osa01LNT0051100.1 1 Osa01LNG0051100 39397410-39399659 intergenetic lncRNA (lincRNA) 1357 44.50995 2
Osa01LNT0051200.1 1 Osa01LNG0051200 39437968-39442864 long non-coding(lnc) isoforms of known genes 1954 45.90583 14
Osa01LNT0051300.1 1 Osa01LNG0051300 39449696-39458379 long non-coding(lnc) isoforms of known genes 2985 47.26968 24
Osa01LNT0051400.2 1 Osa01LNG0051400 39467660-39473818 long non-coding(lnc) isoforms of known genes 2862 45.00349 11
Osa01LNT0051400.1 1 Osa01LNG0051400 39467660-39473818 long non-coding(lnc) isoforms of known genes 2932 44.78172 10
Osa01LNT0051500.1 1 Osa01LNG0051500 39516771-39517928 intergenetic lncRNA (lincRNA) 1158 65.19862 1
Osa01LNT0051600.1 1 Osa01LNG0051600 39538151-39541096 long non-coding(lnc) isoforms of known genes 1314 46.95586 9
Osa01LNT0051700.1 1 Osa01LNG0051700 39565715-39570159 long non-coding(lnc) isoforms of known genes 2325 51.22581 11
Osa01LNT0051800.1 1 Osa01LNG0051800 39616243-39633823 long non-coding(lnc) isoforms of known genes 1399 43.24518 10
Osa01LNT0051900.2 1 Osa01LNG0051900 39654634-39658051 long non-coding(lnc) isoforms of known genes 936 49.03846 4
Osa01LNT0051900.1 1 Osa01LNG0051900 39654634-39658051 long non-coding(lnc) isoforms of known genes 2208 40.57971 3
Osa01LNT0052000.1 1 Osa01LNG0052000 39684691-39690738 long non-coding(lnc) isoforms of known genes 3582 45.36572 10
Osa01LNT0052100.1 1 Osa01LNG0052100 39703410-39708221 long non-coding(lnc) isoforms of known genes 2295 46.27451 18
Osa01LNT0052200.1 1 Osa01LNG0052200 39737140-39741758 long non-coding(lnc) isoforms of known genes 1644 47.14112 13
Osa01LNT0052300.1 1 Osa01LNG0052300 39879458-39890856 long non-coding(lnc) isoforms of known genes 5113 44.76824 29
Osa01LNT0052400.1 1 Osa01LNG0052400 39881693-39882635 long non-coding(lnc) isoforms of known genes 736 43.34239 3
Osa01LNT0052500.1 1 Osa01LNG0052500 39913343-39916470 long non-coding(lnc) isoforms of known genes 1106 52.44123 8
Osa01LNT0052800.1 1 Osa01LNG0052800 39960257-39975893 long non-coding(lnc) isoforms of known genes 5724 43.90287 34
Osa01LNT0052600.1 1 Osa01LNG0052600 39990702-39999062 long non-coding(lnc) isoforms of known genes 818 57.57946 3