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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0212600.1 3 Osa03LNG0212600 12591672-12595636 long non-coding(lnc) isoforms of known genes 2834 44.74241 6
Osa03LNT0212700.1 3 Osa03LNG0212700 12607028-12608268 Antisense lncRNA 208 47.11538 2
Osa03LNT0212800.1 3 Osa03LNG0212800 12630732-12635182 long non-coding(lnc) isoforms of known genes 2778 38.91289 3
Osa03LNT0212900.1 3 Osa03LNG0212900 12643087-12646793 long non-coding(lnc) isoforms of known genes 1627 47.38783 5
Osa03LNT0213000.1 3 Osa03LNG0213000 12676559-12677250 long non-coding(lnc) isoforms of known genes 612 39.54248 2
Osa03LNT0213000.2 3 Osa03LNG0213000 12676559-12677250 long non-coding(lnc) isoforms of known genes 806 42.05955 3
Osa03LNT0213100.1 3 Osa03LNG0213100 12718958-12723993 sense lncRNA 3496 42.3341 13
Osa03LNT0465300.1 3 Osa03LNG0465300 12744327-12744568 intergenetic lncRNA (lincRNA) 242 25.61983 1
Osa03LNT0465200.1 3 Osa03LNG0465200 12744327-12744568 intergenetic lncRNA (lincRNA) 242 25.61983 1
Osa03LNT0213200.1 3 Osa03LNG0213200 12757907-12759336 sense lncRNA 1084 47.32472 2
Osa03LNT0465400.1 3 Osa03LNG0465400 12763588-12763806 intergenetic lncRNA (lincRNA) 219 28.76712 1
Osa03LNT0465500.1 3 Osa03LNG0465500 12763588-12763808 intergenetic lncRNA (lincRNA) 221 28.50679 1
Osa03LNT0213300.1 3 Osa03LNG0213300 12823982-12828217 long non-coding(lnc) isoforms of known genes 2946 42.56619 7
Osa03LNT0213400.1 3 Osa03LNG0213400 12854093-12859389 long non-coding(lnc) isoforms of known genes 1734 50.86505 10
Osa03LNT0213700.1 3 Osa03LNG0213700 12865134-12869259 long non-coding(lnc) isoforms of known genes 1724 53.7703 9
Osa03LNT0213500.1 3 Osa03LNG0213500 12872507-12872916 intronic lncRNA 410 29.7561 1
Osa03LNT0213600.1 3 Osa03LNG0213600 12907225-12907755 Antisense lncRNA 323 64.08669 3
Osa03LNT0465600.1 3 Osa03LNG0465600 12932400-12932661 intergenetic lncRNA (lincRNA) 262 40.45802 1
Osa03LNT0213800.1 3 Osa03LNG0213800 12961404-12966715 long non-coding(lnc) isoforms of known genes 3148 45.93393 3
Osa03LNT0213900.1 3 Osa03LNG0213900 12988940-13002101 long non-coding(lnc) isoforms of known genes 5668 43.52505 13
Osa03LNT0214100.1 3 Osa03LNG0214100 13035377-13046109 long non-coding(lnc) isoforms of known genes 1841 43.83487 7
Osa03LNT0214300.1 3 Osa03LNG0214300 13041492-13041766 intronic lncRNA 275 25.81818 1
Osa03LNT0214200.1 3 Osa03LNG0214200 13041492-13041766 intronic lncRNA 275 25.81818 1
Osa03LNT0214000.1 3 Osa03LNG0214000 13081379-13082938 intergenetic lncRNA (lincRNA) 1560 38.78205 1
Osa03LNT0214400.1 3 Osa03LNG0214400 13087404-13093730 long non-coding(lnc) isoforms of known genes 4370 36.86499 9
Osa03LNT0214500.1 3 Osa03LNG0214500 13164585-13168320 long non-coding(lnc) isoforms of known genes 1515 49.24092 6
Osa03LNT0214600.1 3 Osa03LNG0214600 13168389-13169351 intergenetic lncRNA (lincRNA) 843 51.4828 2
Osa03LNT0214700.1 3 Osa03LNG0214700 13222651-13225466 long non-coding(lnc) isoforms of known genes 1943 50.64334 7
Osa03LNT0214800.1 3 Osa03LNG0214800 13575062-13577311 sense lncRNA 1757 58.22425 2
Osa03LNT0214900.1 3 Osa03LNG0214900 13608690-13612216 sense lncRNA 1865 51.58177 10
Osa03LNT0215100.1 3 Osa03LNG0215100 13727309-13738946 long non-coding(lnc) isoforms of known genes 3396 48.20377 22
Osa03LNT0215000.1 3 Osa03LNG0215000 13743580-13748142 long non-coding(lnc) isoforms of known genes 2009 46.98855 4
Osa03LNT0215200.1 3 Osa03LNG0215200 13807798-13808670 intergenetic lncRNA (lincRNA) 873 48.22451 1
Osa03LNT0215300.1 3 Osa03LNG0215300 13841106-13860857 long non-coding(lnc) isoforms of known genes 5277 45.99204 12
Osa03LNT0215400.1 3 Osa03LNG0215400 13941461-13948782 long non-coding(lnc) isoforms of known genes 1997 46.11918 19
Osa03LNT0194600.1 3 Osa03LNG0194600 1415086-1416587 intergenetic lncRNA (lincRNA) 920 42.17391 4
Osa03LNT0215500.1 3 Osa03LNG0215500 14153895-14158751 long non-coding(lnc) isoforms of known genes 1486 44.68371 17
Osa03LNT0215600.1 3 Osa03LNG0215600 14188272-14192414 long non-coding(lnc) isoforms of known genes 1821 40.9665 7
Osa03LNT0215700.2 3 Osa03LNG0215700 14213209-14220638 long non-coding(lnc) isoforms of known genes 2135 46.65105 13
Osa03LNT0215700.1 3 Osa03LNG0215700 14213209-14220638 long non-coding(lnc) isoforms of known genes 2119 46.76734 13
Osa03LNT0192900.1 3 Osa03LNG0192900 143838-144403 long non-coding(lnc) isoforms of known genes 463 55.07559 2
Osa03LNT0215800.3 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 623 57.94543 4
Osa03LNT0215800.2 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 964 50.3112 3
Osa03LNT0215800.1 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 631 57.84469 4
Osa03LNT0216000.2 3 Osa03LNG0216000 14751379-14754898 long non-coding(lnc) isoforms of known genes 1783 43.63432 5
Osa03LNT0216000.1 3 Osa03LNG0216000 14751379-14754898 long non-coding(lnc) isoforms of known genes 1329 46.87735 7
Osa03LNT0215900.1 3 Osa03LNG0215900 14762732-14763333 intronic lncRNA 602 27.24252 1
Osa03LNT0216200.1 3 Osa03LNG0216200 14850286-14853783 long non-coding(lnc) isoforms of known genes 1857 46.74206 11
Osa03LNT0216100.1 3 Osa03LNG0216100 14854292-14854567 intergenetic lncRNA (lincRNA) 276 76.44928 1
Osa03LNT0216300.1 3 Osa03LNG0216300 14925199-14930386 long non-coding(lnc) isoforms of known genes 3304 53.35956 9