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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0372900.1 7 Osa07LNG0372900 8078976-8082653 long non-coding(lnc) isoforms of known genes 1891 46.27181 7
Osa07LNT0373000.1 7 Osa07LNG0373000 8264833-8278955 long non-coding(lnc) isoforms of known genes 1811 46.76974 12
Osa07LNT0373100.1 7 Osa07LNG0373100 8321651-8325048 long non-coding(lnc) isoforms of known genes 2792 48.88968 4
Osa07LNT0373200.1 7 Osa07LNG0373200 8334409-8337966 long non-coding(lnc) isoforms of known genes 1697 61.75604 5
Osa07LNT0373300.1 7 Osa07LNG0373300 8679295-8683072 intergenetic lncRNA (lincRNA) 1097 49.95442 4
Osa07LNT0373400.1 7 Osa07LNG0373400 8702233-8706909 long non-coding(lnc) isoforms of known genes 2161 54.37298 5
Osa07LNT0373500.1 7 Osa07LNG0373500 8812234-8815314 long non-coding(lnc) isoforms of known genes 936 50.32051 8
Osa07LNT0373600.2 7 Osa07LNG0373600 8930095-8943847 long non-coding(lnc) isoforms of known genes 4524 42.15296 25
Osa07LNT0373600.1 7 Osa07LNG0373600 8930095-8943847 long non-coding(lnc) isoforms of known genes 4609 42.15665 25
Osa07LNT0373700.1 7 Osa07LNG0373700 8993721-8997251 long non-coding(lnc) isoforms of known genes 1892 50.05285 8
Osa07LNT0373800.1 7 Osa07LNG0373800 9071611-9077790 long non-coding(lnc) isoforms of known genes 4886 41.95661 5
Osa07LNT0363800.1 7 Osa07LNG0363800 925097-931502 sense lncRNA 6134 45.04402 3
Osa07LNT0373900.1 7 Osa07LNG0373900 9460566-9473894 long non-coding(lnc) isoforms of known genes 3333 45.69457 23
Osa08LNT0550400.1 8 Osa08LNG0550400 10035211-10035484 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa08LNT0550300.1 8 Osa08LNG0550300 10035211-10035484 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa08LNT0546100.1 8 Osa08LNG0546100 100419-100654 intergenetic lncRNA (lincRNA) 236 23.30508 1
Osa08LNT0550600.1 8 Osa08LNG0550600 10055805-10056079 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0550500.1 8 Osa08LNG0550500 10055805-10056079 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0406400.1 8 Osa08LNG0406400 10084785-10088210 intergenetic lncRNA (lincRNA) 1949 46.38276 4
Osa08LNT0406400.2 8 Osa08LNG0406400 10084785-10088210 intergenetic lncRNA (lincRNA) 2325 44.04301 3
Osa08LNT0550700.1 8 Osa08LNG0550700 10088685-10088900 intergenetic lncRNA (lincRNA) 216 23.61111 1
Osa08LNT0406600.1 8 Osa08LNG0406600 10269099-10270739 sense lncRNA 1153 52.81873 2
Osa08LNT0406500.1 8 Osa08LNG0406500 10296961-10300697 sense lncRNA 1153 52.732 2
Osa08LNT0406700.2 8 Osa08LNG0406700 10361690-10364219 long non-coding(lnc) isoforms of known genes 1083 47.18375 4
Osa08LNT0406700.1 8 Osa08LNG0406700 10361690-10364219 long non-coding(lnc) isoforms of known genes 1164 46.90722 4
Osa08LNT0550800.1 8 Osa08LNG0550800 10547747-10548020 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0550900.1 8 Osa08LNG0550900 10547747-10548020 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0406800.1 8 Osa08LNG0406800 10600809-10601262 intergenetic lncRNA (lincRNA) 454 60.13216 1
Osa08LNT0406900.2 8 Osa08LNG0406900 10621769-10625430 long non-coding(lnc) isoforms of known genes 2337 45.99914 5
Osa08LNT0406900.1 8 Osa08LNG0406900 10621769-10625430 long non-coding(lnc) isoforms of known genes 2556 45.22692 5
Osa08LNT0407000.1 8 Osa08LNG0407000 10633640-10639603 long non-coding(lnc) isoforms of known genes 2109 50.3082 4
Osa08LNT0407000.2 8 Osa08LNG0407000 10633640-10639603 long non-coding(lnc) isoforms of known genes 2080 50.04808 4
Osa08LNT0551000.1 8 Osa08LNG0551000 10890115-10890389 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa08LNT0551100.1 8 Osa08LNG0551100 10890115-10890390 intergenetic lncRNA (lincRNA) 276 26.81159 1
Osa08LNT0407100.1 8 Osa08LNG0407100 11055447-11062439 long non-coding(lnc) isoforms of known genes 1955 44.34783 6
Osa08LNT0407200.2 8 Osa08LNG0407200 11074045-11077072 long non-coding(lnc) isoforms of known genes 2131 40.77898 3
Osa08LNT0407200.1 8 Osa08LNG0407200 11074045-11077072 long non-coding(lnc) isoforms of known genes 2136 40.82397 3
Osa08LNT0396300.1 8 Osa08LNG0396300 1117872-1119151 Antisense lncRNA 236 47.0339 2
Osa08LNT0396400.1 8 Osa08LNG0396400 1121772-1126426 long non-coding(lnc) isoforms of known genes 2902 48.86285 3
Osa08LNT0407300.1 8 Osa08LNG0407300 11271264-11272444 intergenetic lncRNA (lincRNA) 1181 63.16681 1
Osa08LNT0407400.1 8 Osa08LNG0407400 11274716-11279209 long non-coding(lnc) isoforms of known genes 2207 48.43679 10
Osa08LNT0551300.1 8 Osa08LNG0551300 11437347-11437570 intergenetic lncRNA (lincRNA) 224 29.01786 1
Osa08LNT0551200.1 8 Osa08LNG0551200 11437347-11437570 intergenetic lncRNA (lincRNA) 224 29.01786 1
Osa08LNT0407500.1 8 Osa08LNG0407500 11438020-11440989 long non-coding(lnc) isoforms of known genes 2780 46.00719 3
Osa08LNT0407600.1 8 Osa08LNG0407600 11463136-11468530 long non-coding(lnc) isoforms of known genes 2316 51.59758 6
Osa08LNT0407700.1 8 Osa08LNG0407700 11548031-11554951 long non-coding(lnc) isoforms of known genes 3994 46.61993 5
Osa08LNT0407700.2 8 Osa08LNG0407700 11548031-11554951 long non-coding(lnc) isoforms of known genes 3608 47.36696 5
Osa08LNT0407800.1 8 Osa08LNG0407800 11558502-11563711 long non-coding(lnc) isoforms of known genes 2824 42.70538 11
Osa08LNT0551400.1 8 Osa08LNG0551400 11610472-11610747 intergenetic lncRNA (lincRNA) 276 25.36232 1
Osa08LNT0551600.1 8 Osa08LNG0551600 11611549-11611801 intergenetic lncRNA (lincRNA) 253 26.08696 1
Osa08LNT0551500.1 8 Osa08LNG0551500 11611549-11611801 intergenetic lncRNA (lincRNA) 253 26.08696 1
Osa08LNT0407900.1 8 Osa08LNG0407900 11850342-11851170 intergenetic lncRNA (lincRNA) 829 54.8854 1
Osa08LNT0408000.2 8 Osa08LNG0408000 11869981-11879561 long non-coding(lnc) isoforms of known genes 3366 43.31551 15
Osa08LNT0408000.1 8 Osa08LNG0408000 11869981-11879561 long non-coding(lnc) isoforms of known genes 2331 46.16045 14
Osa08LNT0408100.1 8 Osa08LNG0408100 11984666-11988845 long non-coding(lnc) isoforms of known genes 2434 42.235 4
Osa08LNT0396500.1 8 Osa08LNG0396500 1215533-1216327 long non-coding(lnc) isoforms of known genes 682 51.17302 2
Osa08LNT0408200.1 8 Osa08LNG0408200 12293082-12299446 Antisense lncRNA 3696 36.14719 14
Osa08LNT0408300.1 8 Osa08LNG0408300 12331546-12342169 long non-coding(lnc) isoforms of known genes 2241 44.89067 13
Osa08LNT0551700.1 8 Osa08LNG0551700 12393047-12393321 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0408400.1 8 Osa08LNG0408400 12395029-12397313 long non-coding(lnc) isoforms of known genes 1188 47.47475 2
Osa08LNT0408500.1 8 Osa08LNG0408500 12724377-12729939 long non-coding(lnc) isoforms of known genes 3142 43.41184 6
Osa08LNT0408500.2 8 Osa08LNG0408500 12724377-12729939 long non-coding(lnc) isoforms of known genes 3774 43.72019 8
Osa08LNT0408700.1 8 Osa08LNG0408700 12854498-12874362 long non-coding(lnc) isoforms of known genes 3840 46.06771 21
Osa08LNT0551900.1 8 Osa08LNG0551900 12887261-12887532 intergenetic lncRNA (lincRNA) 272 25.73529 1
Osa08LNT0551800.1 8 Osa08LNG0551800 12887261-12887532 intergenetic lncRNA (lincRNA) 272 25.73529 1
Osa08LNT0408600.1 8 Osa08LNG0408600 13000764-13005508 long non-coding(lnc) isoforms of known genes 827 54.89722 3
Osa08LNT0552000.1 8 Osa08LNG0552000 13068802-13069076 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa08LNT0552100.1 8 Osa08LNG0552100 13068802-13069076 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa08LNT0408800.1 8 Osa08LNG0408800 13103465-13106747 sense lncRNA 1021 45.64153 6
Osa08LNT0408900.1 8 Osa08LNG0408900 13392644-13398752 long non-coding(lnc) isoforms of known genes 1397 49.74946 6
Osa08LNT0408900.2 8 Osa08LNG0408900 13392644-13398752 long non-coding(lnc) isoforms of known genes 1207 51.69843 5
Osa08LNT0409100.1 8 Osa08LNG0409100 13740485-13757393 long non-coding(lnc) isoforms of known genes 2780 38.41727 16
Osa08LNT0409000.1 8 Osa08LNG0409000 13909424-13910920 intergenetic lncRNA (lincRNA) 1497 59.38544 1
Osa08LNT0409200.1 8 Osa08LNG0409200 14012437-14017506 intergenetic lncRNA (lincRNA) 5070 45.58185 1
Osa08LNT0409400.1 8 Osa08LNG0409400 14105821-14117869 long non-coding(lnc) isoforms of known genes 2186 45.24245 13
Osa08LNT0409300.2 8 Osa08LNG0409300 14160129-14162426 intergenetic lncRNA (lincRNA) 927 49.83819 3
Osa08LNT0409300.1 8 Osa08LNG0409300 14160129-14162426 intergenetic lncRNA (lincRNA) 866 50.11547 3
Osa08LNT0409500.1 8 Osa08LNG0409500 14167856-14178849 long non-coding(lnc) isoforms of known genes 3657 43.97047 14
Osa08LNT0409600.1 8 Osa08LNG0409600 14186171-14195420 long non-coding(lnc) isoforms of known genes 3926 46.38309 13
Osa08LNT0552200.1 8 Osa08LNG0552200 14267186-14267418 intergenetic lncRNA (lincRNA) 233 41.6309 1
Osa08LNT0409700.1 8 Osa08LNG0409700 14320904-14328132 long non-coding(lnc) isoforms of known genes 2447 50.0613 4
Osa08LNT0409700.2 8 Osa08LNG0409700 14320904-14328132 long non-coding(lnc) isoforms of known genes 6643 41.38191 3
Osa08LNT0409800.1 8 Osa08LNG0409800 14374686-14377049 long non-coding(lnc) isoforms of known genes 747 50.46854 3
Osa08LNT0409900.1 8 Osa08LNG0409900 14681327-14682670 intergenetic lncRNA (lincRNA) 1005 42.88557 2
Osa08LNT0410000.1 8 Osa08LNG0410000 14702695-14704280 long non-coding(lnc) isoforms of known genes 1111 52.65527 5
Osa08LNT0410100.1 8 Osa08LNG0410100 14714744-14721301 long non-coding(lnc) isoforms of known genes 6336 43.26073 3
Osa08LNT0410200.1 8 Osa08LNG0410200 14724938-14731989 long non-coding(lnc) isoforms of known genes 2139 50.07013 13
Osa08LNT0410300.1 8 Osa08LNG0410300 14981455-14992326 long non-coding(lnc) isoforms of known genes 3715 44.68371 27
Osa08LNT0552300.1 8 Osa08LNG0552300 15056925-15057179 intergenetic lncRNA (lincRNA) 255 27.45098 1
Osa08LNT0546200.1 8 Osa08LNG0546200 1509983-1510338 intergenetic lncRNA (lincRNA) 356 29.21348 1
Osa08LNT0552400.1 8 Osa08LNG0552400 15171945-15172204 intergenetic lncRNA (lincRNA) 260 41.92308 1
Osa08LNT0552600.1 8 Osa08LNG0552600 15172572-15172846 intergenetic lncRNA (lincRNA) 275 22.90909 1
Osa08LNT0552500.1 8 Osa08LNG0552500 15172572-15172846 intergenetic lncRNA (lincRNA) 275 22.90909 1
Osa08LNT0552700.1 8 Osa08LNG0552700 15172913-15173157 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa08LNT0552800.1 8 Osa08LNG0552800 15172913-15173157 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa08LNT0410400.1 8 Osa08LNG0410400 15199790-15201794 long non-coding(lnc) isoforms of known genes 1769 49.80215 3
Osa08LNT0410600.1 8 Osa08LNG0410600 15203206-15211913 long non-coding(lnc) isoforms of known genes 2440 44.05738 19
Osa08LNT0410500.1 8 Osa08LNG0410500 15232911-15236363 long non-coding(lnc) isoforms of known genes 1514 45.97094 5
Osa08LNT0410700.1 8 Osa08LNG0410700 15439137-15450255 long non-coding(lnc) isoforms of known genes 3698 43.91563 17
Osa08LNT0396600.1 8 Osa08LNG0396600 1567554-1574379 sense lncRNA 3265 48.66769 10