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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0552900.1 8 Osa08LNG0552900 15689383-15689658 intergenetic lncRNA (lincRNA) 276 23.55072 1
Osa08LNT0553000.1 8 Osa08LNG0553000 15689383-15689658 intergenetic lncRNA (lincRNA) 276 23.55072 1
Osa08LNT0410800.1 8 Osa08LNG0410800 15729435-15731886 intergenetic lncRNA (lincRNA) 2452 39.07015 1
Osa08LNT0411000.1 8 Osa08LNG0411000 15755762-15758527 long non-coding(lnc) isoforms of known genes 1469 46.56229 7
Osa08LNT0411000.2 8 Osa08LNG0411000 15755762-15758527 long non-coding(lnc) isoforms of known genes 1408 46.44886 8
Osa08LNT0410900.2 8 Osa08LNG0410900 15768534-15773225 long non-coding(lnc) isoforms of known genes 1249 50.36029 7
Osa08LNT0410900.1 8 Osa08LNG0410900 15768534-15773225 long non-coding(lnc) isoforms of known genes 1180 50.67797 7
Osa08LNT0553100.1 8 Osa08LNG0553100 15799335-15799595 intergenetic lncRNA (lincRNA) 261 26.81992 1
Osa08LNT0553200.1 8 Osa08LNG0553200 15799335-15799595 intergenetic lncRNA (lincRNA) 261 26.81992 1
Osa08LNT0553300.1 8 Osa08LNG0553300 15865462-15865674 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa08LNT0411100.1 8 Osa08LNG0411100 15984176-15991648 long non-coding(lnc) isoforms of known genes 1094 46.4351 8
Osa08LNT0411100.2 8 Osa08LNG0411100 15984176-15991648 long non-coding(lnc) isoforms of known genes 1059 46.74221 8
Osa08LNT0411200.1 8 Osa08LNG0411200 16074341-16077044 long non-coding(lnc) isoforms of known genes 2400 35.33333 2
Osa08LNT0396700.1 8 Osa08LNG0396700 1609757-1614807 long non-coding(lnc) isoforms of known genes 1867 48.36636 10
Osa08LNT0553400.1 8 Osa08LNG0553400 16191344-16191602 intergenetic lncRNA (lincRNA) 259 41.69884 1
Osa08LNT0396800.2 8 Osa08LNG0396800 1621930-1624080 intergenetic lncRNA (lincRNA) 569 45.51845 2
Osa08LNT0396800.1 8 Osa08LNG0396800 1621930-1624080 intergenetic lncRNA (lincRNA) 2151 37.33147 1
Osa08LNT0411300.1 8 Osa08LNG0411300 16255177-16256961 intergenetic lncRNA (lincRNA) 578 42.90657 4
Osa08LNT0411400.1 8 Osa08LNG0411400 16339624-16345157 long non-coding(lnc) isoforms of known genes 2169 45.50484 12
Osa08LNT0411400.2 8 Osa08LNG0411400 16339624-16345157 long non-coding(lnc) isoforms of known genes 2171 45.46292 12
Osa08LNT0553500.1 8 Osa08LNG0553500 16385158-16385432 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0553600.1 8 Osa08LNG0553600 16385158-16385432 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0396900.1 8 Osa08LNG0396900 1649054-1652609 long non-coding(lnc) isoforms of known genes 3241 43.87535 4
Osa08LNT0553700.1 8 Osa08LNG0553700 16704678-16704888 intergenetic lncRNA (lincRNA) 211 58.29384 1
Osa08LNT0553800.1 8 Osa08LNG0553800 16816053-16816327 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa08LNT0553900.1 8 Osa08LNG0553900 16816394-16816637 intergenetic lncRNA (lincRNA) 244 27.04918 1
Osa08LNT0411500.1 8 Osa08LNG0411500 16836423-16839562 long non-coding(lnc) isoforms of known genes 893 48.48824 4
Osa08LNT0411600.1 8 Osa08LNG0411600 16854918-16856201 intergenetic lncRNA (lincRNA) 1284 35.82555 1
Osa08LNT0411700.1 8 Osa08LNG0411700 16916651-16917450 intergenetic lncRNA (lincRNA) 708 46.0452 2
Osa08LNT0397000.1 8 Osa08LNG0397000 1716498-1719881 long non-coding(lnc) isoforms of known genes 1862 49.51665 10
Osa08LNT0411800.1 8 Osa08LNG0411800 17204994-17209448 long non-coding(lnc) isoforms of known genes 1240 46.29032 15
Osa08LNT0411800.2 8 Osa08LNG0411800 17204994-17209448 long non-coding(lnc) isoforms of known genes 1247 46.35124 15
Osa08LNT0395100.1 8 Osa08LNG0395100 172099-179456 long non-coding(lnc) isoforms of known genes 2119 47.19207 13
Osa08LNT0411900.2 8 Osa08LNG0411900 17214004-17221237 long non-coding(lnc) isoforms of known genes 2860 45.48951 9
Osa08LNT0411900.1 8 Osa08LNG0411900 17214004-17221237 long non-coding(lnc) isoforms of known genes 3105 44.38003 9
Osa08LNT0411900.3 8 Osa08LNG0411900 17214004-17221237 long non-coding(lnc) isoforms of known genes 2392 43.97993 8
Osa08LNT0554000.1 8 Osa08LNG0554000 17326620-17326870 intergenetic lncRNA (lincRNA) 251 25.89641 1
Osa08LNT0554100.1 8 Osa08LNG0554100 17326620-17326870 intergenetic lncRNA (lincRNA) 251 25.89641 1
Osa08LNT0412000.1 8 Osa08LNG0412000 17518379-17523073 long non-coding(lnc) isoforms of known genes 1158 47.84111 7
Osa08LNT0554200.1 8 Osa08LNG0554200 17902226-17902483 intergenetic lncRNA (lincRNA) 258 27.51938 1
Osa08LNT0554300.1 8 Osa08LNG0554300 17902226-17902483 intergenetic lncRNA (lincRNA) 258 27.51938 1
Osa08LNT0397100.1 8 Osa08LNG0397100 1807399-1809499 intergenetic lncRNA (lincRNA) 410 45.36585 3
Osa08LNT0412100.1 8 Osa08LNG0412100 18146367-18149400 long non-coding(lnc) isoforms of known genes 2348 45.48552 2
Osa08LNT0554500.1 8 Osa08LNG0554500 18168032-18168308 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa08LNT0554400.1 8 Osa08LNG0554400 18168032-18168308 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa08LNT0412200.1 8 Osa08LNG0412200 18168729-18172195 long non-coding(lnc) isoforms of known genes 1699 49.0877 4
Osa08LNT0412600.1 8 Osa08LNG0412600 18457614-18462328 Antisense lncRNA 735 55.10204 4
Osa08LNT0412300.2 8 Osa08LNG0412300 18465910-18467911 intergenetic lncRNA (lincRNA) 1404 49.78632 2
Osa08LNT0412300.1 8 Osa08LNG0412300 18465910-18467911 intergenetic lncRNA (lincRNA) 2002 46.55345 1
Osa08LNT0412400.1 8 Osa08LNG0412400 18527587-18530505 long non-coding(lnc) isoforms of known genes 2732 36.89605 3
Osa08LNT0412500.1 8 Osa08LNG0412500 18551080-18551688 intergenetic lncRNA (lincRNA) 609 56.81445 1
Osa08LNT0412800.1 8 Osa08LNG0412800 18605035-18605467 intergenetic lncRNA (lincRNA) 433 51.50115 1
Osa08LNT0412700.1 8 Osa08LNG0412700 18652234-18653256 intergenetic lncRNA (lincRNA) 1023 56.30499 1
Osa08LNT0554600.1 8 Osa08LNG0554600 18677851-18678079 intronic lncRNA 229 25.32751 1
Osa08LNT0554700.1 8 Osa08LNG0554700 18677854-18678076 intronic lncRNA 223 25.56054 1
Osa08LNT0412900.1 8 Osa08LNG0412900 18770303-18771442 sense lncRNA 578 45.32872 2
Osa08LNT0413000.1 8 Osa08LNG0413000 18960129-18966328 long non-coding(lnc) isoforms of known genes 3202 47.18926 17
Osa08LNT0395200.1 8 Osa08LNG0395200 190890-194937 long non-coding(lnc) isoforms of known genes 2835 41.55203 4
Osa08LNT0397200.1 8 Osa08LNG0397200 1918183-1920105 intergenetic lncRNA (lincRNA) 449 47.21604 3
Osa08LNT0397300.1 8 Osa08LNG0397300 1922039-1923667 long non-coding(lnc) isoforms of known genes 653 44.56355 3
Osa08LNT0554800.1 8 Osa08LNG0554800 19318534-19318740 intergenetic lncRNA (lincRNA) 207 23.18841 1
Osa08LNT0555000.1 8 Osa08LNG0555000 19409951-19410224 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0554900.1 8 Osa08LNG0554900 19409951-19410224 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0555200.1 8 Osa08LNG0555200 19514317-19514591 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa08LNT0555100.1 8 Osa08LNG0555100 19514317-19514591 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa08LNT0413100.1 8 Osa08LNG0413100 19672758-19676618 long non-coding(lnc) isoforms of known genes 1929 47.79679 8
Osa08LNT0413200.1 8 Osa08LNG0413200 19703238-19707972 long non-coding(lnc) isoforms of known genes 1978 47.21941 4
Osa08LNT0413300.1 8 Osa08LNG0413300 19775406-19779975 long non-coding(lnc) isoforms of known genes 2616 59.17431 4
Osa08LNT0413400.4 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3107 48.79305 6
Osa08LNT0413400.1 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3755 47.50999 8
Osa08LNT0413400.2 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 4066 46.99951 6
Osa08LNT0413400.3 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3688 47.20716 8
Osa08LNT0555300.1 8 Osa08LNG0555300 19925465-19925709 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa08LNT0555400.1 8 Osa08LNG0555400 19925465-19925709 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa08LNT0413500.1 8 Osa08LNG0413500 19950692-19952388 long non-coding(lnc) isoforms of known genes 1607 58.05849 2
Osa08LNT0397400.1 8 Osa08LNG0397400 2000026-2005612 long non-coding(lnc) isoforms of known genes 2467 45.92623 16
Osa08LNT0555500.1 8 Osa08LNG0555500 20028600-20028816 intergenetic lncRNA (lincRNA) 217 40.09217 1
Osa08LNT0413600.1 8 Osa08LNG0413600 20085782-20086597 intergenetic lncRNA (lincRNA) 816 38.35784 1
Osa08LNT0397500.1 8 Osa08LNG0397500 2013220-2015461 long non-coding(lnc) isoforms of known genes 865 54.21965 5
Osa08LNT0395300.1 8 Osa08LNG0395300 201467-203842 long non-coding(lnc) isoforms of known genes 1271 52.32101 4
Osa08LNT0413700.1 8 Osa08LNG0413700 20245563-20246821 Antisense lncRNA 261 61.30268 3
Osa08LNT0413800.1 8 Osa08LNG0413800 20248618-20254348 long non-coding(lnc) isoforms of known genes 1394 49.78479 6
Osa08LNT0413900.1 8 Osa08LNG0413900 20263877-20264489 intergenetic lncRNA (lincRNA) 613 65.57912 1
Osa08LNT0555700.1 8 Osa08LNG0555700 20265406-20265680 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa08LNT0555600.1 8 Osa08LNG0555600 20265406-20265680 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa08LNT0555800.1 8 Osa08LNG0555800 20307733-20307977 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa08LNT0555900.1 8 Osa08LNG0555900 20308044-20308318 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa08LNT0556000.1 8 Osa08LNG0556000 20343264-20343476 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa08LNT0414000.1 8 Osa08LNG0414000 20359562-20366449 long non-coding(lnc) isoforms of known genes 2098 48.61773 10
Osa08LNT0556100.1 8 Osa08LNG0556100 20399629-20399865 intergenetic lncRNA (lincRNA) 237 64.55696 1
Osa08LNT0414200.1 8 Osa08LNG0414200 20578999-20583484 long non-coding(lnc) isoforms of known genes 2341 46.13413 7
Osa08LNT0414100.1 8 Osa08LNG0414100 20615994-20616660 intergenetic lncRNA (lincRNA) 667 34.03298 1
Osa08LNT0414300.1 8 Osa08LNG0414300 20698551-20702571 Antisense lncRNA 593 47.0489 2
Osa08LNT0414400.2 8 Osa08LNG0414400 20802535-20805463 long non-coding(lnc) isoforms of known genes 1330 45.18797 8
Osa08LNT0414400.1 8 Osa08LNG0414400 20802535-20805463 long non-coding(lnc) isoforms of known genes 1346 45.02229 8
Osa08LNT0414500.1 8 Osa08LNG0414500 20816627-20820444 long non-coding(lnc) isoforms of known genes 1175 49.78723 7
Osa08LNT0414600.1 8 Osa08LNG0414600 20821174-20862257 long non-coding(lnc) isoforms of known genes 1845 61.08401 7
Osa08LNT0414600.2 8 Osa08LNG0414600 20821174-20862257 long non-coding(lnc) isoforms of known genes 1884 53.45011 11
Osa08LNT0414700.1 8 Osa08LNG0414700 21000076-21003935 long non-coding(lnc) isoforms of known genes 1185 47.08861 12
Osa08LNT0414800.1 8 Osa08LNG0414800 21019031-21023588 long non-coding(lnc) isoforms of known genes 4105 40.87698 3