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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0224300.2 3 Osa03LNG0224300 23093191-23096385 long non-coding(lnc) isoforms of known genes 1141 50.56968 4
Osa03LNT0469000.1 3 Osa03LNG0469000 23156394-23156650 intergenetic lncRNA (lincRNA) 257 27.23735 1
Osa03LNT0224400.2 3 Osa03LNG0224400 23369001-23384101 long non-coding(lnc) isoforms of known genes 4710 42.99363 29
Osa03LNT0224400.1 3 Osa03LNG0224400 23369001-23384101 long non-coding(lnc) isoforms of known genes 4347 43.45526 29
Osa03LNT0469100.1 3 Osa03LNG0469100 23422543-23422759 intergenetic lncRNA (lincRNA) 217 37.32719 1
Osa03LNT0224500.1 3 Osa03LNG0224500 23542029-23543025 intergenetic lncRNA (lincRNA) 997 40.52156 1
Osa03LNT0224600.1 3 Osa03LNG0224600 23582094-23584121 intronic lncRNA 2028 45.46351 1
Osa03LNT0224700.2 3 Osa03LNG0224700 23623526-23630664 long non-coding(lnc) isoforms of known genes 3897 40.59533 4
Osa03LNT0224700.1 3 Osa03LNG0224700 23623526-23630664 long non-coding(lnc) isoforms of known genes 6833 39.99707 4
Osa03LNT0224800.1 3 Osa03LNG0224800 23633296-23640082 long non-coding(lnc) isoforms of known genes 690 55.7971 5
Osa03LNT0224900.1 3 Osa03LNG0224900 23789143-23793060 intergenetic lncRNA (lincRNA) 1902 43.42797 4
Osa03LNT0225000.2 3 Osa03LNG0225000 23797039-23808239 long non-coding(lnc) isoforms of known genes 2895 44.42142 25
Osa03LNT0225000.1 3 Osa03LNG0225000 23797039-23808239 long non-coding(lnc) isoforms of known genes 3329 43.28627 24
Osa03LNT0196300.1 3 Osa03LNG0196300 2380025-2384728 long non-coding(lnc) isoforms of known genes 2509 42.92547 11
Osa03LNT0196300.2 3 Osa03LNG0196300 2380025-2384728 long non-coding(lnc) isoforms of known genes 1982 43.89506 13
Osa03LNT0196200.1 3 Osa03LNG0196200 2394401-2394986 intergenetic lncRNA (lincRNA) 586 46.24573 1
Osa03LNT0196400.1 3 Osa03LNG0196400 2396768-2400551 long non-coding(lnc) isoforms of known genes 1976 44.98988 9
Osa03LNT0469200.1 3 Osa03LNG0469200 24004076-24004319 intergenetic lncRNA (lincRNA) 244 26.22951 1
Osa03LNT0469300.1 3 Osa03LNG0469300 24059001-24059257 intergenetic lncRNA (lincRNA) 257 29.57198 1
Osa03LNT0469500.1 3 Osa03LNG0469500 24153313-24153601 intergenetic lncRNA (lincRNA) 289 23.52941 1
Osa03LNT0469400.1 3 Osa03LNG0469400 24153313-24153601 intergenetic lncRNA (lincRNA) 289 23.52941 1
Osa03LNT0225100.1 3 Osa03LNG0225100 24174255-24180467 long non-coding(lnc) isoforms of known genes 2117 50.21256 7
Osa03LNT0469600.1 3 Osa03LNG0469600 24205061-24205316 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa03LNT0469700.1 3 Osa03LNG0469700 24205061-24205316 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa03LNT0225200.1 3 Osa03LNG0225200 24271558-24277899 long non-coding(lnc) isoforms of known genes 2087 60.18208 7
Osa03LNT0225300.1 3 Osa03LNG0225300 24426730-24436012 long non-coding(lnc) isoforms of known genes 5613 42.91823 6
Osa03LNT0196500.1 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3481 42.68888 7
Osa03LNT0196500.2 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3406 42.92425 8
Osa03LNT0196600.4 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 1432 48.25419 3
Osa03LNT0196600.3 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2134 43.11153 3
Osa03LNT0196600.2 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2231 42.71627 2
Osa03LNT0196600.1 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2400 43.45833 2
Osa03LNT0225400.1 3 Osa03LNG0225400 24630180-24634746 long non-coding(lnc) isoforms of known genes 1624 50.61576 8
Osa03LNT0225500.1 3 Osa03LNG0225500 24701195-24706912 sense lncRNA 2863 48.3409 4
Osa03LNT0225600.1 3 Osa03LNG0225600 25005911-25006115 Antisense lncRNA 205 24.87805 1
Osa03LNT0225700.1 3 Osa03LNG0225700 25008341-25010369 long non-coding(lnc) isoforms of known genes 929 52.96017 3
Osa03LNT0225800.1 3 Osa03LNG0225800 25042427-25051552 long non-coding(lnc) isoforms of known genes 4111 52.49331 21
Osa03LNT0225900.1 3 Osa03LNG0225900 25062638-25066668 long non-coding(lnc) isoforms of known genes 2006 49.8006 8
Osa03LNT0226000.1 3 Osa03LNG0226000 25073911-25074163 intronic lncRNA 253 38.73518 1
Osa03LNT0469800.1 3 Osa03LNG0469800 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0469900.1 3 Osa03LNG0469900 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0470100.1 3 Osa03LNG0470100 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470000.1 3 Osa03LNG0470000 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470200.1 3 Osa03LNG0470200 25215923-25216166 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa03LNT0470300.1 3 Osa03LNG0470300 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0470400.1 3 Osa03LNG0470400 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0226100.1 3 Osa03LNG0226100 25248155-25248402 intergenetic lncRNA (lincRNA) 248 25.40323 1
Osa03LNT0226200.1 3 Osa03LNG0226200 25268199-25273008 long non-coding(lnc) isoforms of known genes 1659 44.24352 7
Osa03LNT0226300.1 3 Osa03LNG0226300 25279444-25286376 long non-coding(lnc) isoforms of known genes 1721 46.31028 13
Osa03LNT0470500.1 3 Osa03LNG0470500 25289592-25289856 intergenetic lncRNA (lincRNA) 265 26.79245 1