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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0401500.1 8 Osa08LNG0401500 5422681-5423896 long non-coding(lnc) isoforms of known genes 627 48.96332 3
Osa08LNT0401600.1 8 Osa08LNG0401600 5441225-5443998 sense lncRNA 1466 47.8854 3
Osa08LNT0401700.1 8 Osa08LNG0401700 5446026-5446579 intergenetic lncRNA (lincRNA) 554 39.16968 1
Osa08LNT0401800.1 8 Osa08LNG0401800 5446749-5449958 long non-coding(lnc) isoforms of known genes 1231 51.34037 3
Osa08LNT0395700.1 8 Osa08LNG0395700 546844-549396 long non-coding(lnc) isoforms of known genes 2191 54.58695 2
Osa08LNT0401900.2 8 Osa08LNG0401900 5519878-5523386 intergenetic lncRNA (lincRNA) 2549 46.92036 4
Osa08LNT0401900.1 8 Osa08LNG0401900 5519878-5523386 intergenetic lncRNA (lincRNA) 3148 47.29987 5
Osa08LNT0546700.1 8 Osa08LNG0546700 5568701-5568975 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa08LNT0402000.1 8 Osa08LNG0402000 5584231-5587025 long non-coding(lnc) isoforms of known genes 1401 56.38829 2
Osa08LNT0395800.1 8 Osa08LNG0395800 561002-571309 long non-coding(lnc) isoforms of known genes 3272 46.30196 22
Osa08LNT0402100.1 8 Osa08LNG0402100 5683376-5688032 intergenetic lncRNA (lincRNA) 3273 42.49924 5
Osa08LNT0395900.1 8 Osa08LNG0395900 580320-586704 long non-coding(lnc) isoforms of known genes 3420 58.07018 19
Osa08LNT0402200.2 8 Osa08LNG0402200 5810108-5816119 long non-coding(lnc) isoforms of known genes 3576 43.00895 8
Osa08LNT0402200.3 8 Osa08LNG0402200 5810108-5816119 long non-coding(lnc) isoforms of known genes 3391 41.40372 7
Osa08LNT0402200.1 8 Osa08LNG0402200 5810108-5816119 long non-coding(lnc) isoforms of known genes 3456 43.11343 9
Osa08LNT0402300.1 8 Osa08LNG0402300 5963425-5968143 long non-coding(lnc) isoforms of known genes 4006 43.60959 4
Osa08LNT0402400.1 8 Osa08LNG0402400 5995982-5996226 intergenetic lncRNA (lincRNA) 245 39.59184 1
Osa08LNT0402500.1 8 Osa08LNG0402500 6244128-6247133 long non-coding(lnc) isoforms of known genes 767 48.2399 6
Osa08LNT0546800.1 8 Osa08LNG0546800 6409487-6409754 intergenetic lncRNA (lincRNA) 268 50.37313 1
Osa08LNT0547000.1 8 Osa08LNG0547000 6480573-6480827 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa08LNT0546900.1 8 Osa08LNG0546900 6480573-6480827 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa08LNT0396000.1 8 Osa08LNG0396000 662198-664157 long non-coding(lnc) isoforms of known genes 1535 44.62541 2
Osa08LNT0402600.1 8 Osa08LNG0402600 6666187-6667207 intergenetic lncRNA (lincRNA) 928 49.89224 2
Osa08LNT0547100.1 8 Osa08LNG0547100 6785590-6785851 intergenetic lncRNA (lincRNA) 262 41.60305 1
Osa08LNT0547300.1 8 Osa08LNG0547300 6786063-6786337 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa08LNT0547200.1 8 Osa08LNG0547200 6786063-6786337 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa08LNT0547400.1 8 Osa08LNG0547400 6786404-6786648 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa08LNT0547500.1 8 Osa08LNG0547500 6791549-6791823 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0547600.1 8 Osa08LNG0547600 6791549-6791823 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0402700.2 8 Osa08LNG0402700 6866467-6871620 long non-coding(lnc) isoforms of known genes 844 45.97156 4
Osa08LNT0402700.1 8 Osa08LNG0402700 6866467-6871620 long non-coding(lnc) isoforms of known genes 999 48.54855 5
Osa08LNT0547700.1 8 Osa08LNG0547700 7079243-7079504 intergenetic lncRNA (lincRNA) 262 41.98473 1
Osa08LNT0547800.1 8 Osa08LNG0547800 7079716-7079990 intergenetic lncRNA (lincRNA) 275 23.63636 1
Osa08LNT0547900.1 8 Osa08LNG0547900 7079716-7079990 intergenetic lncRNA (lincRNA) 275 23.63636 1
Osa08LNT0548000.1 8 Osa08LNG0548000 7080057-7080301 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa08LNT0548100.1 8 Osa08LNG0548100 7085203-7085477 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0548200.1 8 Osa08LNG0548200 7085203-7085477 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0402800.1 8 Osa08LNG0402800 7209594-7209893 intergenetic lncRNA (lincRNA) 300 51.0 1
Osa08LNT0402900.1 8 Osa08LNG0402900 7341433-7348049 long non-coding(lnc) isoforms of known genes 598 47.82609 5
Osa08LNT0403000.1 8 Osa08LNG0403000 7342771-7342973 intronic lncRNA 203 25.12315 1
Osa08LNT0403100.1 8 Osa08LNG0403100 7344158-7345150 intronic lncRNA 993 31.82276 1
Osa08LNT0403200.1 8 Osa08LNG0403200 7559283-7563171 long non-coding(lnc) isoforms of known genes 2353 46.02635 8
Osa08LNT0403300.1 8 Osa08LNG0403300 7568558-7573900 long non-coding(lnc) isoforms of known genes 2632 44.9848 8
Osa08LNT0403300.2 8 Osa08LNG0403300 7568558-7573900 long non-coding(lnc) isoforms of known genes 2293 46.48932 8
Osa08LNT0548400.1 8 Osa08LNG0548400 7647287-7647560 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa08LNT0548300.1 8 Osa08LNG0548300 7647287-7647560 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa08LNT0403400.2 8 Osa08LNG0403400 7881914-7883133 intergenetic lncRNA (lincRNA) 761 53.08804 2
Osa08LNT0403400.1 8 Osa08LNG0403400 7881914-7883133 intergenetic lncRNA (lincRNA) 1220 45.2459 1
Osa08LNT0403500.1 8 Osa08LNG0403500 7908279-7909098 intergenetic lncRNA (lincRNA) 486 48.55967 3
Osa08LNT0403600.1 8 Osa08LNG0403600 7919630-7922377 sense lncRNA 2476 40.4685 2
Osa08LNT0403700.1 8 Osa08LNG0403700 7981383-7988196 Antisense lncRNA 865 47.86127 3
Osa08LNT0548500.1 8 Osa08LNG0548500 8004261-8004537 intergenetic lncRNA (lincRNA) 277 25.63177 1
Osa08LNT0548600.1 8 Osa08LNG0548600 8004261-8004537 intergenetic lncRNA (lincRNA) 277 25.63177 1
Osa08LNT0403800.1 8 Osa08LNG0403800 8011502-8014326 long non-coding(lnc) isoforms of known genes 925 48.43243 3
Osa08LNT0403900.1 8 Osa08LNG0403900 8018575-8021584 long non-coding(lnc) isoforms of known genes 1986 41.08761 4
Osa08LNT0404100.1 8 Osa08LNG0404100 8070510-8070928 intergenetic lncRNA (lincRNA) 419 50.358 1
Osa08LNT0404000.1 8 Osa08LNG0404000 8070510-8070928 intergenetic lncRNA (lincRNA) 419 50.358 1
Osa08LNT0404300.1 8 Osa08LNG0404300 8107778-8120243 long non-coding(lnc) isoforms of known genes 4717 44.94382 14
Osa08LNT0404200.1 8 Osa08LNG0404200 8147380-8148729 long non-coding(lnc) isoforms of known genes 919 49.83678 3
Osa08LNT0404500.1 8 Osa08LNG0404500 8172756-8177396 sense lncRNA 3737 39.65748 2
Osa08LNT0404500.2 8 Osa08LNG0404500 8172756-8177396 sense lncRNA 2218 43.50766 4
Osa08LNT0404400.1 8 Osa08LNG0404400 8182363-8182732 intergenetic lncRNA (lincRNA) 370 63.24324 1
Osa08LNT0548800.1 8 Osa08LNG0548800 8211345-8211619 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0548700.1 8 Osa08LNG0548700 8211345-8211619 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0548900.1 8 Osa08LNG0548900 8225436-8225649 intergenetic lncRNA (lincRNA) 214 26.16822 1
Osa08LNT0549000.1 8 Osa08LNG0549000 8225437-8225649 intergenetic lncRNA (lincRNA) 213 26.29108 1
Osa08LNT0404600.1 8 Osa08LNG0404600 8335742-8339610 long non-coding(lnc) isoforms of known genes 1293 51.04408 7
Osa08LNT0404800.1 8 Osa08LNG0404800 8342253-8346555 long non-coding(lnc) isoforms of known genes 2435 48.9117 5
Osa08LNT0404800.2 8 Osa08LNG0404800 8342253-8346555 long non-coding(lnc) isoforms of known genes 2213 49.29959 7
Osa08LNT0404700.1 8 Osa08LNG0404700 8351872-8352124 intergenetic lncRNA (lincRNA) 253 51.3834 1
Osa08LNT0405000.1 8 Osa08LNG0405000 8415405-8417869 long non-coding(lnc) isoforms of known genes 1227 48.41076 7
Osa08LNT0404900.1 8 Osa08LNG0404900 8497338-8500144 long non-coding(lnc) isoforms of known genes 1384 57.4422 5
Osa08LNT0405100.1 8 Osa08LNG0405100 8657885-8658139 intergenetic lncRNA (lincRNA) 255 62.7451 1
Osa08LNT0405200.1 8 Osa08LNG0405200 8669224-8672734 long non-coding(lnc) isoforms of known genes 1069 50.5145 10
Osa08LNT0405300.1 8 Osa08LNG0405300 8789402-8792448 long non-coding(lnc) isoforms of known genes 2257 43.24324 3
Osa08LNT0405400.1 8 Osa08LNG0405400 8811775-8816691 long non-coding(lnc) isoforms of known genes 2402 43.79684 11
Osa08LNT0405500.1 8 Osa08LNG0405500 8879953-8888069 long non-coding(lnc) isoforms of known genes 2814 48.86283 14
Osa08LNT0396100.1 8 Osa08LNG0396100 888548-889168 intergenetic lncRNA (lincRNA) 621 47.02093 1
Osa08LNT0549100.1 8 Osa08LNG0549100 8895138-8895368 intergenetic lncRNA (lincRNA) 231 38.52814 1
Osa08LNT0405600.1 8 Osa08LNG0405600 8904139-8908891 intergenetic lncRNA (lincRNA) 2311 44.43964 2
Osa08LNT0549200.1 8 Osa08LNG0549200 8936347-8936549 intergenetic lncRNA (lincRNA) 203 41.37931 1
Osa08LNT0549300.1 8 Osa08LNG0549300 8998476-8998730 intergenetic lncRNA (lincRNA) 255 27.05882 1
Osa08LNT0405700.1 8 Osa08LNG0405700 9128338-9134701 sense lncRNA 1497 41.88377 12
Osa08LNT0405800.2 8 Osa08LNG0405800 9224375-9228416 long non-coding(lnc) isoforms of known genes 3275 58.96183 4
Osa08LNT0405800.1 8 Osa08LNG0405800 9224375-9228416 long non-coding(lnc) isoforms of known genes 2845 56.52021 4
Osa08LNT0405900.1 8 Osa08LNG0405900 9282406-9284592 intergenetic lncRNA (lincRNA) 2187 37.44856 1
Osa08LNT0406000.1 8 Osa08LNG0406000 9433370-9433999 intergenetic lncRNA (lincRNA) 405 42.71605 2
Osa08LNT0549400.1 8 Osa08LNG0549400 9435173-9435394 intergenetic lncRNA (lincRNA) 222 27.92793 1
Osa08LNT0406100.1 8 Osa08LNG0406100 9451678-9452424 intergenetic lncRNA (lincRNA) 496 38.10484 2
Osa08LNT0406300.1 8 Osa08LNG0406300 9477451-9482623 long non-coding(lnc) isoforms of known genes 1801 50.91616 10
Osa08LNT0406300.2 8 Osa08LNG0406300 9477451-9482623 long non-coding(lnc) isoforms of known genes 3736 42.58565 7
Osa08LNT0406200.1 8 Osa08LNG0406200 9487779-9491808 intergenetic lncRNA (lincRNA) 1556 42.86632 3
Osa08LNT0396200.1 8 Osa08LNG0396200 956250-958711 long non-coding(lnc) isoforms of known genes 958 53.02714 5
Osa08LNT0549600.1 8 Osa08LNG0549600 9712560-9712831 intergenetic lncRNA (lincRNA) 272 28.67647 1
Osa08LNT0549500.1 8 Osa08LNG0549500 9712560-9712831 intergenetic lncRNA (lincRNA) 272 28.67647 1
Osa08LNT0549700.1 8 Osa08LNG0549700 9910776-9911047 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa08LNT0549800.1 8 Osa08LNG0549800 9910776-9911047 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa08LNT0550000.1 8 Osa08LNG0550000 9912033-9912307 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0549900.1 8 Osa08LNG0549900 9912033-9912307 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0550100.1 8 Osa08LNG0550100 9929896-9930170 intergenetic lncRNA (lincRNA) 275 28.36364 1