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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0196700.1 3 Osa03LNG0196700 2543680-2546338 long non-coding(lnc) isoforms of known genes 965 50.67358 5
Osa03LNT0226400.2 3 Osa03LNG0226400 25517644-25519926 intergenetic lncRNA (lincRNA) 1183 44.12511 9
Osa03LNT0226400.1 3 Osa03LNG0226400 25517644-25519926 intergenetic lncRNA (lincRNA) 1450 41.86207 8
Osa03LNT0226500.3 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 2176 43.97978 12
Osa03LNT0226500.2 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 1509 48.31014 13
Osa03LNT0226500.1 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 1558 47.8819 14
Osa03LNT0470600.1 3 Osa03LNG0470600 25611407-25611683 intergenetic lncRNA (lincRNA) 277 24.90975 1
Osa03LNT0470700.1 3 Osa03LNG0470700 25611407-25611683 intergenetic lncRNA (lincRNA) 277 24.90975 1
Osa03LNT0470800.1 3 Osa03LNG0470800 25740742-25741026 intergenetic lncRNA (lincRNA) 285 27.01754 1
Osa03LNT0470900.1 3 Osa03LNG0470900 25740742-25741026 intergenetic lncRNA (lincRNA) 285 27.01754 1
Osa03LNT0471000.1 3 Osa03LNG0471000 25902893-25903100 intergenetic lncRNA (lincRNA) 208 48.55769 1
Osa03LNT0226600.2 3 Osa03LNG0226600 26135889-26138165 intergenetic lncRNA (lincRNA) 1147 47.34089 3
Osa03LNT0226600.1 3 Osa03LNG0226600 26135889-26138165 intergenetic lncRNA (lincRNA) 1998 40.89089 2
Osa03LNT0226700.1 3 Osa03LNG0226700 26207742-26211666 long non-coding(lnc) isoforms of known genes 1980 48.33333 9
Osa03LNT0226800.1 3 Osa03LNG0226800 26249023-26251894 long non-coding(lnc) isoforms of known genes 2663 43.07172 3
Osa03LNT0226900.1 3 Osa03LNG0226900 26290118-26290327 intronic lncRNA 210 26.19048 1
Osa03LNT0227000.1 3 Osa03LNG0227000 26293298-26298494 long non-coding(lnc) isoforms of known genes 1684 49.40618 10
Osa03LNT0193200.1 3 Osa03LNG0193200 262986-265742 intergenetic lncRNA (lincRNA) 2671 37.88843 2
Osa03LNT0227100.1 3 Osa03LNG0227100 26308523-26312879 long non-coding(lnc) isoforms of known genes 632 51.42405 4
Osa03LNT0227300.1 3 Osa03LNG0227300 26380755-26385440 long non-coding(lnc) isoforms of known genes 2120 47.21698 12
Osa03LNT0227200.1 3 Osa03LNG0227200 26396424-26397374 long non-coding(lnc) isoforms of known genes 767 63.88527 3
Osa03LNT0471100.1 3 Osa03LNG0471100 26411915-26412128 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa03LNT0227400.1 3 Osa03LNG0227400 26445311-26448758 long non-coding(lnc) isoforms of known genes 1652 45.52058 10
Osa03LNT0227600.1 3 Osa03LNG0227600 26541625-26542523 long non-coding(lnc) isoforms of known genes 807 56.00991 2
Osa03LNT0227500.1 3 Osa03LNG0227500 26543069-26543598 intergenetic lncRNA (lincRNA) 530 61.50943 1
Osa03LNT0227800.2 3 Osa03LNG0227800 26547357-26556151 long non-coding(lnc) isoforms of known genes 4491 46.09218 10
Osa03LNT0227800.1 3 Osa03LNG0227800 26547357-26556151 long non-coding(lnc) isoforms of known genes 4608 46.00694 9
Osa03LNT0227700.1 3 Osa03LNG0227700 26556986-26557795 intergenetic lncRNA (lincRNA) 810 48.88889 1
Osa03LNT0227900.1 3 Osa03LNG0227900 26623617-26632189 long non-coding(lnc) isoforms of known genes 2884 43.48128 12
Osa03LNT0227900.2 3 Osa03LNG0227900 26623617-26632189 long non-coding(lnc) isoforms of known genes 2888 43.55956 12
Osa03LNT0228000.1 3 Osa03LNG0228000 26623809-26625677 long non-coding(lnc) isoforms of known genes 1326 42.91101 3
Osa03LNT0471200.1 3 Osa03LNG0471200 26779936-26780229 intergenetic lncRNA (lincRNA) 294 33.67347 1
Osa03LNT0228100.1 3 Osa03LNG0228100 26916701-26924663 long non-coding(lnc) isoforms of known genes 1742 48.85189 9
Osa03LNT0228100.2 3 Osa03LNG0228100 26916701-26924663 long non-coding(lnc) isoforms of known genes 1984 48.03427 9
Osa03LNT0228200.1 3 Osa03LNG0228200 26972919-26975422 intergenetic lncRNA (lincRNA) 2504 40.49521 1
Osa03LNT0471300.1 3 Osa03LNG0471300 27116951-27117178 intergenetic lncRNA (lincRNA) 228 29.82456 1
Osa03LNT0228300.1 3 Osa03LNG0228300 27134606-27138691 long non-coding(lnc) isoforms of known genes 2924 44.39124 3
Osa03LNT0228400.1 3 Osa03LNG0228400 27269708-27274116 long non-coding(lnc) isoforms of known genes 2156 47.44898 7
Osa03LNT0228500.2 3 Osa03LNG0228500 27431867-27436591 long non-coding(lnc) isoforms of known genes 1627 59.61893 3
Osa03LNT0228500.1 3 Osa03LNG0228500 27431867-27436591 long non-coding(lnc) isoforms of known genes 3496 46.05263 3
Osa03LNT0228600.1 3 Osa03LNG0228600 27545857-27550134 long non-coding(lnc) isoforms of known genes 1927 49.76648 13
Osa03LNT0228700.1 3 Osa03LNG0228700 27583507-27592803 long non-coding(lnc) isoforms of known genes 4170 49.11271 8
Osa03LNT0228800.1 3 Osa03LNG0228800 27644646-27647511 long non-coding(lnc) isoforms of known genes 2773 43.59899 2
Osa03LNT0193300.2 3 Osa03LNG0193300 276806-278906 long non-coding(lnc) isoforms of known genes 1615 49.28793 3
Osa03LNT0193300.1 3 Osa03LNG0193300 276806-278906 long non-coding(lnc) isoforms of known genes 1194 54.60637 3
Osa03LNT0229000.2 3 Osa03LNG0229000 27705349-27710717 long non-coding(lnc) isoforms of known genes 2903 52.1185 11
Osa03LNT0229000.1 3 Osa03LNG0229000 27705349-27710717 long non-coding(lnc) isoforms of known genes 3284 53.53228 8
Osa03LNT0228900.1 3 Osa03LNG0228900 27715160-27717505 intergenetic lncRNA (lincRNA) 1223 43.58136 5
Osa03LNT0229100.1 3 Osa03LNG0229100 27861769-27872174 long non-coding(lnc) isoforms of known genes 3114 47.17405 23
Osa03LNT0229100.2 3 Osa03LNG0229100 27861769-27872174 long non-coding(lnc) isoforms of known genes 3109 47.18559 23