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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa09LNT0438400.1 9 Osa09LNG0438400 14509080-14510125 intergenetic lncRNA (lincRNA) 1046 28.68069 1
Osa09LNT0438500.1 9 Osa09LNG0438500 14607519-14609835 long non-coding(lnc) isoforms of known genes 1613 54.9287 6
Osa09LNT0438700.1 9 Osa09LNG0438700 14677541-14680737 long non-coding(lnc) isoforms of known genes 1605 49.78193 4
Osa09LNT0438600.1 9 Osa09LNG0438600 14691187-14693114 long non-coding(lnc) isoforms of known genes 680 49.41176 4
Osa09LNT0426700.1 9 Osa09LNG0426700 1488712-1489312 intergenetic lncRNA (lincRNA) 601 54.07654 1
Osa09LNT0438900.1 9 Osa09LNG0438900 15076563-15077832 Antisense lncRNA 283 50.53004 3
Osa09LNT0438800.1 9 Osa09LNG0438800 15102248-15106479 intergenetic lncRNA (lincRNA) 565 44.42478 2
Osa09LNT0439000.1 9 Osa09LNG0439000 15204109-15207922 long non-coding(lnc) isoforms of known genes 1412 49.50425 7
Osa09LNT0439100.1 9 Osa09LNG0439100 15217290-15218672 intergenetic lncRNA (lincRNA) 606 39.60396 4
Osa09LNT0439200.1 9 Osa09LNG0439200 15349074-15352396 long non-coding(lnc) isoforms of known genes 2151 38.16829 5
Osa09LNT0439300.1 9 Osa09LNG0439300 15408300-15415085 sense lncRNA 4522 40.9111 9
Osa09LNT0439400.1 9 Osa09LNG0439400 15447741-15449982 long non-coding(lnc) isoforms of known genes 1510 52.78146 6
Osa09LNT0439500.1 9 Osa09LNG0439500 15450603-15456012 long non-coding(lnc) isoforms of known genes 1425 59.57895 7
Osa09LNT0576100.1 9 Osa09LNG0576100 1552360-1552592 intergenetic lncRNA (lincRNA) 233 43.77682 1
Osa09LNT0439600.1 9 Osa09LNG0439600 15549199-15549456 intergenetic lncRNA (lincRNA) 258 60.46512 1
Osa09LNT0439700.1 9 Osa09LNG0439700 15563768-15569456 long non-coding(lnc) isoforms of known genes 4055 41.10974 4
Osa09LNT0439800.1 9 Osa09LNG0439800 15599975-15600434 intronic lncRNA 460 30.65217 1
Osa09LNT0582200.1 9 Osa09LNG0582200 15671577-15671780 intergenetic lncRNA (lincRNA) 204 33.33333 1
Osa09LNT0439900.1 9 Osa09LNG0439900 15712107-15712719 intergenetic lncRNA (lincRNA) 613 60.19576 1
Osa09LNT0440000.1 9 Osa09LNG0440000 15937013-15943746 long non-coding(lnc) isoforms of known genes 3590 47.24234 16
Osa09LNT0440000.2 9 Osa09LNG0440000 15937013-15943746 long non-coding(lnc) isoforms of known genes 3557 47.17459 17
Osa09LNT0440200.1 9 Osa09LNG0440200 15975161-15975360 intergenetic lncRNA (lincRNA) 200 52.0 1
Osa09LNT0440100.1 9 Osa09LNG0440100 15978501-15981136 long non-coding(lnc) isoforms of known genes 2427 48.94932 3
Osa09LNT0576200.1 9 Osa09LNG0576200 1606872-1607147 intergenetic lncRNA (lincRNA) 276 27.89855 1
Osa09LNT0576300.1 9 Osa09LNG0576300 1606872-1607147 intergenetic lncRNA (lincRNA) 276 27.89855 1
Osa09LNT0576500.1 9 Osa09LNG0576500 1608252-1608526 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa09LNT0576400.1 9 Osa09LNG0576400 1608252-1608526 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa09LNT0426800.2 9 Osa09LNG0426800 1612210-1617510 long non-coding(lnc) isoforms of known genes 2689 47.0807 4
Osa09LNT0426800.1 9 Osa09LNG0426800 1612210-1617510 long non-coding(lnc) isoforms of known genes 1432 55.37709 6
Osa09LNT0582400.1 9 Osa09LNG0582400 16381201-16381474 intergenetic lncRNA (lincRNA) 274 28.10219 1
Osa09LNT0582300.1 9 Osa09LNG0582300 16381201-16381474 intergenetic lncRNA (lincRNA) 274 28.10219 1
Osa09LNT0440300.1 9 Osa09LNG0440300 16422290-16425218 long non-coding(lnc) isoforms of known genes 2390 51.54812 3
Osa09LNT0440400.1 9 Osa09LNG0440400 16556249-16556488 intronic lncRNA 240 34.58333 1
Osa09LNT0582500.1 9 Osa09LNG0582500 16726098-16726404 intergenetic lncRNA (lincRNA) 307 32.89902 1
Osa09LNT0440600.1 9 Osa09LNG0440600 16855394-16860772 long non-coding(lnc) isoforms of known genes 3195 42.19092 11
Osa09LNT0440500.1 9 Osa09LNG0440500 16876404-16876889 intergenetic lncRNA (lincRNA) 486 54.11523 1
Osa09LNT0440700.1 9 Osa09LNG0440700 16883993-16885324 intergenetic lncRNA (lincRNA) 967 50.36194 2
Osa09LNT0440800.1 9 Osa09LNG0440800 16945131-16947984 long non-coding(lnc) isoforms of known genes 1245 45.78313 3
Osa09LNT0440900.2 9 Osa09LNG0440900 16991807-16996017 long non-coding(lnc) isoforms of known genes 2746 45.04734 8
Osa09LNT0440900.1 9 Osa09LNG0440900 16991807-16996017 long non-coding(lnc) isoforms of known genes 2347 46.95356 10
Osa09LNT0441000.1 9 Osa09LNG0441000 17008779-17013718 long non-coding(lnc) isoforms of known genes 1667 43.43131 6
Osa09LNT0441100.1 9 Osa09LNG0441100 17016789-17024125 long non-coding(lnc) isoforms of known genes 3883 48.15864 10
Osa09LNT0441200.1 9 Osa09LNG0441200 17074842-17079624 long non-coding(lnc) isoforms of known genes 1236 51.45631 7
Osa09LNT0582600.1 9 Osa09LNG0582600 17211634-17211878 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa09LNT0582700.1 9 Osa09LNG0582700 17211945-17212219 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa09LNT0441400.1 9 Osa09LNG0441400 17252951-17253182 Antisense lncRNA 232 41.37931 1
Osa09LNT0441300.1 9 Osa09LNG0441300 17269254-17269995 intergenetic lncRNA (lincRNA) 742 52.15633 1
Osa09LNT0441500.1 9 Osa09LNG0441500 17567735-17571966 long non-coding(lnc) isoforms of known genes 1412 42.91785 8
Osa09LNT0441600.1 9 Osa09LNG0441600 17569383-17571645 sense lncRNA 2141 44.97898 2
Osa09LNT0441800.1 9 Osa09LNG0441800 17600502-17609104 long non-coding(lnc) isoforms of known genes 3403 52.13047 11
Osa09LNT0441700.1 9 Osa09LNG0441700 17637029-17642350 sense lncRNA 894 43.06488 3
Osa09LNT0442000.1 9 Osa09LNG0442000 17659384-17662227 long non-coding(lnc) isoforms of known genes 702 60.54131 6
Osa09LNT0441900.1 9 Osa09LNG0441900 17677715-17678411 intergenetic lncRNA (lincRNA) 697 50.50215 1
Osa09LNT0442100.1 9 Osa09LNG0442100 17734739-17738279 long non-coding(lnc) isoforms of known genes 3451 46.68212 2
Osa09LNT0442100.2 9 Osa09LNG0442100 17734739-17738279 long non-coding(lnc) isoforms of known genes 2579 50.40713 3
Osa09LNT0582800.1 9 Osa09LNG0582800 17775021-17775262 intergenetic lncRNA (lincRNA) 242 27.27273 1
Osa09LNT0442200.1 9 Osa09LNG0442200 17827936-17835013 sense lncRNA 1674 48.26762 5
Osa09LNT0442300.1 9 Osa09LNG0442300 17851431-17868798 long non-coding(lnc) isoforms of known genes 4309 50.49896 25
Osa09LNT0442400.1 9 Osa09LNG0442400 17961284-17965662 sense lncRNA 2631 45.458 4
Osa09LNT0442500.1 9 Osa09LNG0442500 17968429-17971287 long non-coding(lnc) isoforms of known genes 2470 44.33198 4
Osa09LNT0442600.1 9 Osa09LNG0442600 18001212-18003148 Antisense lncRNA 559 60.8229 2
Osa09LNT0442700.1 9 Osa09LNG0442700 18085556-18090832 long non-coding(lnc) isoforms of known genes 3628 48.59427 4
Osa09LNT0442800.1 9 Osa09LNG0442800 18097688-18100385 long non-coding(lnc) isoforms of known genes 1396 46.9914 3
Osa09LNT0442900.1 9 Osa09LNG0442900 18100543-18109784 long non-coding(lnc) isoforms of known genes 3475 43.97122 15
Osa09LNT0443000.1 9 Osa09LNG0443000 18150745-18155423 long non-coding(lnc) isoforms of known genes 2696 47.18101 19
Osa09LNT0443100.1 9 Osa09LNG0443100 18217459-18221122 long non-coding(lnc) isoforms of known genes 2230 51.16592 8
Osa09LNT0443400.1 9 Osa09LNG0443400 18223776-18230942 long non-coding(lnc) isoforms of known genes 3037 46.72374 13
Osa09LNT0443400.2 9 Osa09LNG0443400 18223776-18230942 long non-coding(lnc) isoforms of known genes 3083 46.67532 13
Osa09LNT0443200.1 9 Osa09LNG0443200 18240716-18245317 sense lncRNA 2688 56.54762 2
Osa09LNT0443300.1 9 Osa09LNG0443300 18272513-18273225 intergenetic lncRNA (lincRNA) 713 57.223 1
Osa09LNT0443600.1 9 Osa09LNG0443600 18316013-18322383 long non-coding(lnc) isoforms of known genes 3449 46.85416 7
Osa09LNT0443500.1 9 Osa09LNG0443500 18330008-18333054 long non-coding(lnc) isoforms of known genes 1122 52.76292 5
Osa09LNT0443700.1 9 Osa09LNG0443700 18475033-18476381 long non-coding(lnc) isoforms of known genes 1068 63.38951 4
Osa09LNT0443800.1 9 Osa09LNG0443800 18496976-18501218 long non-coding(lnc) isoforms of known genes 3884 44.28424 4
Osa09LNT0443900.1 9 Osa09LNG0443900 18514921-18515256 Antisense lncRNA 233 60.08584 2
Osa09LNT0443900.2 9 Osa09LNG0443900 18514921-18515256 Antisense lncRNA 279 60.9319 2
Osa09LNT0444100.1 9 Osa09LNG0444100 18543094-18548908 long non-coding(lnc) isoforms of known genes 1894 42.39704 21
Osa09LNT0444000.1 9 Osa09LNG0444000 18563305-18563771 intergenetic lncRNA (lincRNA) 467 53.31906 1
Osa09LNT0444200.1 9 Osa09LNG0444200 18565522-18569106 long non-coding(lnc) isoforms of known genes 1661 43.6484 9
Osa09LNT0444300.1 9 Osa09LNG0444300 18611429-18613022 sense lncRNA 1001 63.73626 2
Osa09LNT0444400.2 9 Osa09LNG0444400 18779617-18782247 long non-coding(lnc) isoforms of known genes 2194 44.3938 3
Osa09LNT0444400.1 9 Osa09LNG0444400 18779617-18782247 long non-coding(lnc) isoforms of known genes 2278 44.95171 4
Osa09LNT0444500.1 9 Osa09LNG0444500 18783042-18787246 long non-coding(lnc) isoforms of known genes 3268 46.57283 8
Osa09LNT0444600.1 9 Osa09LNG0444600 18863239-18867497 long non-coding(lnc) isoforms of known genes 1571 52.89624 5
Osa09LNT0444700.1 9 Osa09LNG0444700 18944434-18946216 sense lncRNA 1276 53.68339 2
Osa09LNT0444800.1 9 Osa09LNG0444800 18978153-18983471 long non-coding(lnc) isoforms of known genes 1928 50.36307 11
Osa09LNT0444900.1 9 Osa09LNG0444900 19004868-19005113 intergenetic lncRNA (lincRNA) 246 64.63415 1
Osa09LNT0445000.1 9 Osa09LNG0445000 19020438-19024327 long non-coding(lnc) isoforms of known genes 1870 43.15508 5
Osa09LNT0445100.1 9 Osa09LNG0445100 19121959-19125032 long non-coding(lnc) isoforms of known genes 2733 48.9206 3
Osa09LNT0576700.1 9 Osa09LNG0576700 1914012-1914286 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa09LNT0576600.1 9 Osa09LNG0576600 1914012-1914286 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa09LNT0426900.1 9 Osa09LNG0426900 1917256-1919675 intergenetic lncRNA (lincRNA) 1080 46.57407 3
Osa09LNT0445200.1 9 Osa09LNG0445200 19195331-19196215 Antisense lncRNA 678 58.40708 2
Osa09LNT0445200.2 9 Osa09LNG0445200 19195331-19196215 Antisense lncRNA 681 58.44347 2
Osa09LNT0445300.1 9 Osa09LNG0445300 19209910-19211314 intergenetic lncRNA (lincRNA) 581 40.96386 3
Osa09LNT0445400.1 9 Osa09LNG0445400 19241018-19244397 long non-coding(lnc) isoforms of known genes 1052 46.10266 5
Osa09LNT0445500.1 9 Osa09LNG0445500 19292778-19296073 long non-coding(lnc) isoforms of known genes 2568 44.31464 5
Osa09LNT0445600.1 9 Osa09LNG0445600 19406189-19407793 long non-coding(lnc) isoforms of known genes 1255 45.89641 5
Osa09LNT0445700.1 9 Osa09LNG0445700 19406212-19408388 long non-coding(lnc) isoforms of known genes 1548 53.74677 8
Osa09LNT0445800.1 9 Osa09LNG0445800 19439293-19440988 intergenetic lncRNA (lincRNA) 1428 57.70308 4