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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa09LNT0445800.2 9 Osa09LNG0445800 19439293-19440988 intergenetic lncRNA (lincRNA) 1418 57.82793 4
Osa09LNT0445900.1 9 Osa09LNG0445900 19454684-19456210 sense lncRNA 1331 42.44929 3
Osa09LNT0446000.1 9 Osa09LNG0446000 19459316-19462718 long non-coding(lnc) isoforms of known genes 1698 47.11425 5
Osa09LNT0446000.2 9 Osa09LNG0446000 19459316-19462718 long non-coding(lnc) isoforms of known genes 2403 45.35997 5
Osa09LNT0446100.1 9 Osa09LNG0446100 19503162-19506977 long non-coding(lnc) isoforms of known genes 1039 49.75938 7
Osa09LNT0446200.1 9 Osa09LNG0446200 19509236-19512657 long non-coding(lnc) isoforms of known genes 1917 45.74857 6
Osa09LNT0446400.1 9 Osa09LNG0446400 19774860-19779210 long non-coding(lnc) isoforms of known genes 2293 42.73877 12
Osa09LNT0446300.2 9 Osa09LNG0446300 19783527-19786472 long non-coding(lnc) isoforms of known genes 1611 54.0658 4
Osa09LNT0446300.1 9 Osa09LNG0446300 19783527-19786472 long non-coding(lnc) isoforms of known genes 1630 53.74233 4
Osa09LNT0446500.1 9 Osa09LNG0446500 19812678-19815059 long non-coding(lnc) isoforms of known genes 1267 48.85556 8
Osa09LNT0446600.1 9 Osa09LNG0446600 19823023-19831332 long non-coding(lnc) isoforms of known genes 4000 46.325 19
Osa09LNT0446700.1 9 Osa09LNG0446700 19854123-19859695 long non-coding(lnc) isoforms of known genes 4450 52.65169 4
Osa09LNT0446800.1 9 Osa09LNG0446800 19900692-19904484 long non-coding(lnc) isoforms of known genes 1927 52.62065 13
Osa09LNT0582900.1 9 Osa09LNG0582900 19908837-19909044 Antisense lncRNA 208 23.55769 1
Osa09LNT0426000.1 9 Osa09LNG0426000 20024-36119 Antisense lncRNA 240 58.75 3
Osa09LNT0446900.1 9 Osa09LNG0446900 20070639-20073650 long non-coding(lnc) isoforms of known genes 1400 46.5 6
Osa09LNT0446900.2 9 Osa09LNG0446900 20070639-20073650 long non-coding(lnc) isoforms of known genes 1305 46.97318 7
Osa09LNT0447000.1 9 Osa09LNG0447000 20107034-20114569 long non-coding(lnc) isoforms of known genes 3216 48.78731 7
Osa09LNT0447100.1 9 Osa09LNG0447100 20128246-20134358 long non-coding(lnc) isoforms of known genes 3028 55.77939 5
Osa09LNT0583000.1 9 Osa09LNG0583000 20170517-20170772 intergenetic lncRNA (lincRNA) 256 28.51562 1
Osa09LNT0447200.1 9 Osa09LNG0447200 20241374-20243308 long non-coding(lnc) isoforms of known genes 1328 46.00904 4
Osa09LNT0447300.1 9 Osa09LNG0447300 20243654-20248436 long non-coding(lnc) isoforms of known genes 2188 41.17916 11
Osa09LNT0427000.1 9 Osa09LNG0427000 2029030-2029525 intergenetic lncRNA (lincRNA) 496 38.70968 1
Osa09LNT0447400.1 9 Osa09LNG0447400 20348482-20350901 long non-coding(lnc) isoforms of known genes 2256 61.87943 3
Osa09LNT0447600.1 9 Osa09LNG0447600 20522725-20525555 long non-coding(lnc) isoforms of known genes 1771 53.64201 3
Osa09LNT0447500.1 9 Osa09LNG0447500 20528648-20532222 long non-coding(lnc) isoforms of known genes 2153 40.03716 6
Osa09LNT0447700.1 9 Osa09LNG0447700 20535359-20540201 long non-coding(lnc) isoforms of known genes 2008 46.36454 10
Osa09LNT0447800.1 9 Osa09LNG0447800 20541311-20547843 long non-coding(lnc) isoforms of known genes 3016 46.91645 14
Osa09LNT0447900.1 9 Osa09LNG0447900 20567915-20574883 long non-coding(lnc) isoforms of known genes 3842 61.81676 9
Osa09LNT0448000.1 9 Osa09LNG0448000 20673697-20678640 long non-coding(lnc) isoforms of known genes 2402 45.29559 8
Osa09LNT0576900.1 9 Osa09LNG0576900 2072940-2073213 intergenetic lncRNA (lincRNA) 274 28.10219 1
Osa09LNT0576800.1 9 Osa09LNG0576800 2072940-2073213 intergenetic lncRNA (lincRNA) 274 28.10219 1
Osa09LNT0577100.1 9 Osa09LNG0577100 2073280-2073517 intergenetic lncRNA (lincRNA) 238 26.89076 1
Osa09LNT0577000.1 9 Osa09LNG0577000 2073280-2073517 intergenetic lncRNA (lincRNA) 238 26.89076 1
Osa09LNT0583100.1 9 Osa09LNG0583100 20759060-20759276 intergenetic lncRNA (lincRNA) 217 41.47465 1
Osa09LNT0448100.2 9 Osa09LNG0448100 20799161-20802916 long non-coding(lnc) isoforms of known genes 1484 47.2372 12
Osa09LNT0448100.1 9 Osa09LNG0448100 20799161-20802916 long non-coding(lnc) isoforms of known genes 2042 45.24976 11
Osa09LNT0448300.1 9 Osa09LNG0448300 20857810-20864356 long non-coding(lnc) isoforms of known genes 839 43.74255 3
Osa09LNT0448200.1 9 Osa09LNG0448200 20868846-20871077 long non-coding(lnc) isoforms of known genes 2127 51.38693 2
Osa09LNT0448400.1 9 Osa09LNG0448400 20885198-20889703 long non-coding(lnc) isoforms of known genes 2419 47.08557 9
Osa09LNT0448400.2 9 Osa09LNG0448400 20885198-20889703 long non-coding(lnc) isoforms of known genes 2639 46.49488 9
Osa09LNT0448500.1 9 Osa09LNG0448500 20915434-20925955 long non-coding(lnc) isoforms of known genes 4108 52.99416 11
Osa09LNT0448600.1 9 Osa09LNG0448600 20946004-20952920 long non-coding(lnc) isoforms of known genes 3212 47.82067 17
Osa09LNT0448700.1 9 Osa09LNG0448700 21064027-21068711 long non-coding(lnc) isoforms of known genes 2481 45.02217 10
Osa09LNT0448800.1 9 Osa09LNG0448800 21141467-21142072 intergenetic lncRNA (lincRNA) 606 60.56106 1
Osa09LNT0448900.1 9 Osa09LNG0448900 21199731-21203261 long non-coding(lnc) isoforms of known genes 2020 39.9505 6
Osa09LNT0448900.2 9 Osa09LNG0448900 21199731-21203261 long non-coding(lnc) isoforms of known genes 1461 47.91239 7
Osa09LNT0449100.1 9 Osa09LNG0449100 21254336-21256853 long non-coding(lnc) isoforms of known genes 658 48.48024 4
Osa09LNT0449000.1 9 Osa09LNG0449000 21260360-21261902 long non-coding(lnc) isoforms of known genes 1361 53.63703 2
Osa09LNT0449200.1 9 Osa09LNG0449200 21347264-21350949 long non-coding(lnc) isoforms of known genes 2455 46.10998 9
Osa09LNT0449200.3 9 Osa09LNG0449200 21347264-21350949 long non-coding(lnc) isoforms of known genes 1955 50.38363 10
Osa09LNT0449200.4 9 Osa09LNG0449200 21347264-21350949 long non-coding(lnc) isoforms of known genes 1953 48.54071 10
Osa09LNT0449200.5 9 Osa09LNG0449200 21347264-21350949 long non-coding(lnc) isoforms of known genes 2333 51.56451 9
Osa09LNT0449200.2 9 Osa09LNG0449200 21347264-21350949 long non-coding(lnc) isoforms of known genes 2457 47.57835 9
Osa09LNT0449300.1 9 Osa09LNG0449300 21354818-21357810 long non-coding(lnc) isoforms of known genes 1165 54.07725 5
Osa09LNT0427100.1 9 Osa09LNG0427100 2136068-2137010 intergenetic lncRNA (lincRNA) 943 49.31071 1
Osa09LNT0583200.1 9 Osa09LNG0583200 21446878-21447133 intergenetic lncRNA (lincRNA) 256 27.73438 1
Osa09LNT0426100.1 9 Osa09LNG0426100 21493-30221 sense lncRNA 801 64.29463 2
Osa09LNT0449400.1 9 Osa09LNG0449400 21550457-21559163 long non-coding(lnc) isoforms of known genes 730 55.06849 2
Osa09LNT0449500.1 9 Osa09LNG0449500 21686098-21688723 long non-coding(lnc) isoforms of known genes 2049 43.09419 3
Osa09LNT0449600.1 9 Osa09LNG0449600 21745610-21746804 sense lncRNA 757 63.01189 2
Osa09LNT0583300.1 9 Osa09LNG0583300 21748629-21748865 intergenetic lncRNA (lincRNA) 237 31.64557 1
Osa09LNT0449700.1 9 Osa09LNG0449700 21771414-21778020 long non-coding(lnc) isoforms of known genes 2512 57.20541 8
Osa09LNT0427200.2 9 Osa09LNG0427200 2181697-2187405 long non-coding(lnc) isoforms of known genes 1882 47.55579 6
Osa09LNT0427200.1 9 Osa09LNG0427200 2181697-2187405 long non-coding(lnc) isoforms of known genes 2153 45.75012 5
Osa09LNT0449800.1 9 Osa09LNG0449800 21868631-21877762 long non-coding(lnc) isoforms of known genes 4109 44.22 25
Osa09LNT0449900.1 9 Osa09LNG0449900 21922941-21926057 long non-coding(lnc) isoforms of known genes 1233 50.28386 7
Osa09LNT0450000.1 9 Osa09LNG0450000 21949057-21952372 long non-coding(lnc) isoforms of known genes 1558 47.36842 6
Osa09LNT0450100.2 9 Osa09LNG0450100 22107352-22113414 long non-coding(lnc) isoforms of known genes 1888 43.9089 13
Osa09LNT0450100.1 9 Osa09LNG0450100 22107352-22113414 long non-coding(lnc) isoforms of known genes 1804 44.56763 14
Osa09LNT0450200.2 9 Osa09LNG0450200 22114202-22119961 long non-coding(lnc) isoforms of known genes 3001 44.58514 9
Osa09LNT0450200.1 9 Osa09LNG0450200 22114202-22119961 long non-coding(lnc) isoforms of known genes 2221 47.23098 9
Osa09LNT0450300.1 9 Osa09LNG0450300 22173736-22178247 long non-coding(lnc) isoforms of known genes 1545 50.03236 12
Osa09LNT0450400.1 9 Osa09LNG0450400 22207649-22208631 sense lncRNA 931 52.63158 2
Osa09LNT0450500.1 9 Osa09LNG0450500 22248966-22254366 long non-coding(lnc) isoforms of known genes 3085 45.73744 9
Osa09LNT0427300.1 9 Osa09LNG0427300 2226146-2227970 intergenetic lncRNA (lincRNA) 1681 47.29328 2
Osa09LNT0450600.1 9 Osa09LNG0450600 22287181-22291728 long non-coding(lnc) isoforms of known genes 1602 51.06117 7
Osa09LNT0450700.1 9 Osa09LNG0450700 22367879-22373612 long non-coding(lnc) isoforms of known genes 3277 46.71956 9
Osa09LNT0450900.1 9 Osa09LNG0450900 22405509-22414370 long non-coding(lnc) isoforms of known genes 2114 46.07379 11
Osa09LNT0450900.2 9 Osa09LNG0450900 22405509-22414370 long non-coding(lnc) isoforms of known genes 4230 39.64539 10
Osa09LNT0450800.1 9 Osa09LNG0450800 22459240-22461831 sense lncRNA 2111 42.16011 4
Osa09LNT0451000.1 9 Osa09LNG0451000 22507944-22510456 long non-coding(lnc) isoforms of known genes 1574 44.53621 10
Osa09LNT0451100.1 9 Osa09LNG0451100 22631214-22633487 long non-coding(lnc) isoforms of known genes 1600 53.0 3
Osa09LNT0451200.1 9 Osa09LNG0451200 22701807-22703104 long non-coding(lnc) isoforms of known genes 507 53.84615 4
Osa09LNT0451300.1 9 Osa09LNG0451300 22793297-22797763 long non-coding(lnc) isoforms of known genes 1893 50.23772 5
Osa09LNT0451400.1 9 Osa09LNG0451400 22811278-22814067 long non-coding(lnc) isoforms of known genes 2096 47.1374 6
Osa09LNT0451500.2 9 Osa09LNG0451500 22883138-22887559 long non-coding(lnc) isoforms of known genes 2430 49.71193 6
Osa09LNT0451500.1 9 Osa09LNG0451500 22883138-22887559 long non-coding(lnc) isoforms of known genes 2520 49.00794 5
Osa09LNT0452000.1 9 Osa09LNG0452000 22911567-22917101 long non-coding(lnc) isoforms of known genes 2513 47.59252 16
Osa09LNT0452100.1 9 Osa09LNG0452100 22925577-22928730 long non-coding(lnc) isoforms of known genes 1349 46.62713 5
Osa09LNT0577200.1 9 Osa09LNG0577200 2314508-2314783 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa09LNT0577300.1 9 Osa09LNG0577300 2314508-2314783 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa09LNT0427400.1 9 Osa09LNG0427400 2320603-2322676 long non-coding(lnc) isoforms of known genes 1921 42.79021 2
Osa09LNT0427500.1 9 Osa09LNG0427500 2335658-2349605 long non-coding(lnc) isoforms of known genes 1247 38.01123 3
Osa09LNT0427700.1 9 Osa09LNG0427700 2357522-2361313 long non-coding(lnc) isoforms of known genes 2598 45.34257 3
Osa09LNT0427600.1 9 Osa09LNG0427600 2364663-2370044 long non-coding(lnc) isoforms of known genes 1100 52.09091 5
Osa09LNT0577500.1 9 Osa09LNG0577500 2393516-2393787 intergenetic lncRNA (lincRNA) 272 25.73529 1
Osa09LNT0577400.1 9 Osa09LNG0577400 2393516-2393787 intergenetic lncRNA (lincRNA) 272 25.73529 1
Osa09LNT0427800.2 9 Osa09LNG0427800 2396780-2400017 long non-coding(lnc) isoforms of known genes 2906 33.0351 3
Osa09LNT0427800.3 9 Osa09LNG0427800 2396780-2400017 long non-coding(lnc) isoforms of known genes 2985 33.16583 2