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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0052700.1 1 Osa01LNG0052700 40006067-40010924 long non-coding(lnc) isoforms of known genes 2502 49.20064 6
Osa01LNT0005200.1 1 Osa01LNG0005200 4002746-4005036 long non-coding(lnc) isoforms of known genes 2184 55.54029 2
Osa01LNT0052900.2 1 Osa01LNG0052900 40070821-40073830 long non-coding(lnc) isoforms of known genes 1955 46.03581 5
Osa01LNT0052900.1 1 Osa01LNG0052900 40070821-40073830 long non-coding(lnc) isoforms of known genes 1925 45.92208 5
Osa01LNT0053000.1 1 Osa01LNG0053000 40153226-40157517 long non-coding(lnc) isoforms of known genes 1822 60.04391 2
Osa01LNT0053100.1 1 Osa01LNG0053100 40331031-40332096 intergenetic lncRNA (lincRNA) 1066 51.31332 1
Osa01LNT0005400.3 1 Osa01LNG0005400 4033754-4043703 long non-coding(lnc) isoforms of known genes 4869 48.28507 24
Osa01LNT0005400.2 1 Osa01LNG0005400 4033754-4043703 long non-coding(lnc) isoforms of known genes 4881 48.24831 24
Osa01LNT0005400.1 1 Osa01LNG0005400 4033754-4043703 long non-coding(lnc) isoforms of known genes 4876 48.23626 24
Osa01LNT0053200.1 1 Osa01LNG0053200 40380669-40383776 intergenetic lncRNA (lincRNA) 896 41.62946 2
Osa01LNT0053300.1 1 Osa01LNG0053300 40390422-40393093 sense lncRNA 1253 48.68316 3
Osa01LNT0053400.1 1 Osa01LNG0053400 40404917-40407750 long non-coding(lnc) isoforms of known genes 2161 45.02545 6
Osa01LNT0053500.1 1 Osa01LNG0053500 40483306-40490012 long non-coding(lnc) isoforms of known genes 5297 49.61299 9
Osa01LNT0053600.1 1 Osa01LNG0053600 40496253-40498355 long non-coding(lnc) isoforms of known genes 945 54.07407 6
Osa01LNT0005300.1 1 Osa01LNG0005300 4051898-4057889 long non-coding(lnc) isoforms of known genes 3155 41.64818 9
Osa01LNT0053700.1 1 Osa01LNG0053700 40556039-40556784 intergenetic lncRNA (lincRNA) 746 61.26005 1
Osa01LNT0053800.1 1 Osa01LNG0053800 40585450-40587442 long non-coding(lnc) isoforms of known genes 1607 42.75047 4
Osa01LNT0053900.1 1 Osa01LNG0053900 40610708-40612229 long non-coding(lnc) isoforms of known genes 1426 47.40533 2
Osa01LNT0054000.1 1 Osa01LNG0054000 40633318-40636748 long non-coding(lnc) isoforms of known genes 2212 48.68897 4
Osa01LNT0054100.1 1 Osa01LNG0054100 40668641-40671873 long non-coding(lnc) isoforms of known genes 732 43.44262 3
Osa01LNT0054200.2 1 Osa01LNG0054200 40708658-40712960 long non-coding(lnc) isoforms of known genes 2115 50.26005 12
Osa01LNT0054200.1 1 Osa01LNG0054200 40708658-40712960 long non-coding(lnc) isoforms of known genes 2027 50.96201 13
Osa01LNT0054300.1 1 Osa01LNG0054300 40710256-40711146 long non-coding(lnc) isoforms of known genes 677 42.39291 2
Osa01LNT0005500.1 1 Osa01LNG0005500 4071300-4071657 intergenetic lncRNA (lincRNA) 358 55.30726 1
Osa01LNT0054400.1 1 Osa01LNG0054400 40723381-40730507 long non-coding(lnc) isoforms of known genes 2549 52.25579 16
Osa01LNT0462200.1 1 Osa01LNG0462200 40818892-40819148 intergenetic lncRNA (lincRNA) 257 27.62646 1
Osa01LNT0462300.1 1 Osa01LNG0462300 40818892-40819148 intergenetic lncRNA (lincRNA) 257 27.62646 1
Osa01LNT0054500.2 1 Osa01LNG0054500 40858575-40861675 long non-coding(lnc) isoforms of known genes 1656 52.17391 12
Osa01LNT0054500.1 1 Osa01LNG0054500 40858575-40861675 long non-coding(lnc) isoforms of known genes 1912 49.58159 11
Osa01LNT0054600.1 1 Osa01LNG0054600 40864921-40868344 long non-coding(lnc) isoforms of known genes 2437 47.02503 6
Osa01LNT0054700.1 1 Osa01LNG0054700 40935408-40935913 intergenetic lncRNA (lincRNA) 506 46.64032 1
Osa01LNT0054900.2 1 Osa01LNG0054900 40937852-40940996 long non-coding(lnc) isoforms of known genes 1399 48.89207 5
Osa01LNT0054900.1 1 Osa01LNG0054900 40937852-40940996 long non-coding(lnc) isoforms of known genes 2437 43.373 5
Osa01LNT0054800.1 1 Osa01LNG0054800 40942545-40943105 sense lncRNA 371 49.86523 2
Osa01LNT0055000.1 1 Osa01LNG0055000 41007465-41008440 long non-coding(lnc) isoforms of known genes 904 61.17257 2
Osa01LNT0055100.1 1 Osa01LNG0055100 41067062-41073367 long non-coding(lnc) isoforms of known genes 2732 47.54758 15
Osa01LNT0055200.2 1 Osa01LNG0055200 41100496-41105054 long non-coding(lnc) isoforms of known genes 1567 45.11806 10
Osa01LNT0055200.1 1 Osa01LNG0055200 41100496-41105054 long non-coding(lnc) isoforms of known genes 1503 45.24285 11
Osa01LNT0055300.2 1 Osa01LNG0055300 41112089-41114856 long non-coding(lnc) isoforms of known genes 1562 56.01793 3
Osa01LNT0055300.1 1 Osa01LNG0055300 41112089-41114856 long non-coding(lnc) isoforms of known genes 1823 56.39057 2
Osa01LNT0055400.1 1 Osa01LNG0055400 41116407-41119190 long non-coding(lnc) isoforms of known genes 2096 46.04008 3
Osa01LNT0055500.1 1 Osa01LNG0055500 41155827-41165147 long non-coding(lnc) isoforms of known genes 6770 46.54357 9
Osa01LNT0055600.1 1 Osa01LNG0055600 41299751-41300158 intergenetic lncRNA (lincRNA) 408 47.79412 1
Osa01LNT0055700.1 1 Osa01LNG0055700 41305718-41314177 long non-coding(lnc) isoforms of known genes 1559 52.91854 9
Osa01LNT0055800.1 1 Osa01LNG0055800 41455791-41456884 sense lncRNA 807 43.49442 2
Osa01LNT0055900.1 1 Osa01LNG0055900 41486856-41494443 long non-coding(lnc) isoforms of known genes 4913 42.51985 11
Osa01LNT0056000.1 1 Osa01LNG0056000 41542086-41545857 long non-coding(lnc) isoforms of known genes 2617 42.75888 6
Osa01LNT0454700.1 1 Osa01LNG0454700 4157987-4158188 intergenetic lncRNA (lincRNA) 202 35.14851 1
Osa01LNT0005600.1 1 Osa01LNG0005600 4160566-4164399 long non-coding(lnc) isoforms of known genes 1100 46.63636 9
Osa01LNT0056100.1 1 Osa01LNG0056100 41728692-41729581 sense lncRNA 577 45.7539 3
Osa01LNT0056200.1 1 Osa01LNG0056200 41781275-41788531 long non-coding(lnc) isoforms of known genes 1916 47.96451 9
Osa01LNT0056300.1 1 Osa01LNG0056300 41822398-41825087 long non-coding(lnc) isoforms of known genes 1198 42.7379 7
Osa01LNT0056400.1 1 Osa01LNG0056400 41864771-41866546 long non-coding(lnc) isoforms of known genes 1341 48.54586 4
Osa01LNT0056500.2 1 Osa01LNG0056500 41874009-41880597 long non-coding(lnc) isoforms of known genes 2549 50.76501 18
Osa01LNT0056500.1 1 Osa01LNG0056500 41874009-41880597 long non-coding(lnc) isoforms of known genes 2545 50.72692 18
Osa01LNT0056600.1 1 Osa01LNG0056600 41925788-41932875 long non-coding(lnc) isoforms of known genes 3754 48.02877 9
Osa01LNT0056700.1 1 Osa01LNG0056700 42000420-42002929 long non-coding(lnc) isoforms of known genes 2416 53.51821 2
Osa01LNT0056800.1 1 Osa01LNG0056800 42037177-42039691 long non-coding(lnc) isoforms of known genes 2428 57.86656 2
Osa01LNT0056900.1 1 Osa01LNG0056900 42135598-42135947 intergenetic lncRNA (lincRNA) 350 66.0 1
Osa01LNT0005700.1 1 Osa01LNG0005700 4215038-4217365 long non-coding(lnc) isoforms of known genes 1748 61.0984 3
Osa01LNT0057000.1 1 Osa01LNG0057000 42234599-42237446 long non-coding(lnc) isoforms of known genes 1307 51.87452 11
Osa01LNT0057100.1 1 Osa01LNG0057100 42265023-42268466 long non-coding(lnc) isoforms of known genes 1258 47.45628 14
Osa01LNT0057200.1 1 Osa01LNG0057200 42303492-42311211 long non-coding(lnc) isoforms of known genes 2302 45.43875 21
Osa01LNT0057300.3 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5314 41.70117 22
Osa01LNT0057300.2 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5590 41.37746 20
Osa01LNT0057300.1 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5516 41.47933 21
Osa01LNT0057400.1 1 Osa01LNG0057400 42413471-42416572 long non-coding(lnc) isoforms of known genes 1272 47.09119 6
Osa01LNT0057500.1 1 Osa01LNG0057500 42695637-42699039 long non-coding(lnc) isoforms of known genes 2013 56.58222 6
Osa01LNT0057600.1 1 Osa01LNG0057600 42752981-42757184 long non-coding(lnc) isoforms of known genes 1935 45.11628 10
Osa01LNT0057700.1 1 Osa01LNG0057700 42774999-42778601 long non-coding(lnc) isoforms of known genes 996 44.37751 7
Osa01LNT0462400.1 1 Osa01LNG0462400 42783230-42783450 intergenetic lncRNA (lincRNA) 221 38.00905 1
Osa01LNT0462500.1 1 Osa01LNG0462500 42783230-42783450 intergenetic lncRNA (lincRNA) 221 38.00905 1
Osa01LNT0005800.1 1 Osa01LNG0005800 4281663-4283655 long non-coding(lnc) isoforms of known genes 469 47.76119 2
Osa01LNT0057800.1 1 Osa01LNG0057800 42826262-42828667 long non-coding(lnc) isoforms of known genes 1138 55.6239 8
Osa01LNT0057900.1 1 Osa01LNG0057900 42870535-42872637 long non-coding(lnc) isoforms of known genes 1244 54.18006 5
Osa01LNT0058100.1 1 Osa01LNG0058100 42923736-42923973 intergenetic lncRNA (lincRNA) 238 42.01681 1
Osa01LNT0058000.1 1 Osa01LNG0058000 42923736-42923973 intergenetic lncRNA (lincRNA) 238 42.01681 1
Osa01LNT0462600.1 1 Osa01LNG0462600 42925217-42925421 intergenetic lncRNA (lincRNA) 205 23.41463 1
Osa01LNT0462700.1 1 Osa01LNG0462700 43004631-43004832 intergenetic lncRNA (lincRNA) 202 46.53465 1
Osa01LNT0058200.2 1 Osa01LNG0058200 43049162-43058976 long non-coding(lnc) isoforms of known genes 4485 43.92419 17
Osa01LNT0058200.1 1 Osa01LNG0058200 43049162-43058976 long non-coding(lnc) isoforms of known genes 4395 43.89078 18
Osa01LNT0058300.1 1 Osa01LNG0058300 43120167-43134502 long non-coding(lnc) isoforms of known genes 7637 45.93427 25
Osa01LNT0058400.1 1 Osa01LNG0058400 43205700-43215244 long non-coding(lnc) isoforms of known genes 4469 40.56836 10
Osa01LNT0058500.1 1 Osa01LNG0058500 43242321-43243259 intergenetic lncRNA (lincRNA) 939 60.0639 1
Osa01LNT0058600.1 1 Osa01LNG0058600 43248497-43249469 sense lncRNA 781 53.64917 2
Osa01LNT0005900.1 1 Osa01LNG0005900 4329461-4338444 long non-coding(lnc) isoforms of known genes 4417 46.38895 14
Osa01LNT0005900.2 1 Osa01LNG0005900 4329461-4338444 long non-coding(lnc) isoforms of known genes 4208 46.60171 15
Osa01LNT0000200.1 1 Osa01LNG0000200 436154-437296 intergenetic lncRNA (lincRNA) 1143 49.34383 1
Osa01LNT0006000.1 1 Osa01LNG0006000 4423907-4426863 long non-coding(lnc) isoforms of known genes 1079 45.69045 5
Osa01LNT0006100.1 1 Osa01LNG0006100 4459088-4484508 intergenetic lncRNA (lincRNA) 2797 46.2281 15
Osa01LNT0006100.2 1 Osa01LNG0006100 4459088-4484508 long non-coding(lnc) isoforms of known genes 4512 47.11879 24
Osa01LNT0006200.1 1 Osa01LNG0006200 4581256-4584537 long non-coding(lnc) isoforms of known genes 1629 55.06446 6
Osa01LNT0006300.1 1 Osa01LNG0006300 4712105-4713825 intergenetic lncRNA (lincRNA) 511 55.3816 2
Osa01LNT0006400.1 1 Osa01LNG0006400 4731780-4737606 long non-coding(lnc) isoforms of known genes 4121 45.23174 6
Osa01LNT0006400.2 1 Osa01LNG0006400 4731780-4737606 long non-coding(lnc) isoforms of known genes 4001 45.48863 7
Osa01LNT0006600.1 1 Osa01LNG0006600 4741811-4742499 long non-coding(lnc) isoforms of known genes 515 44.85437 3
Osa01LNT0006500.1 1 Osa01LNG0006500 4761327-4767478 long non-coding(lnc) isoforms of known genes 1464 47.47268 9
Osa01LNT0006700.1 1 Osa01LNG0006700 4879909-4885839 long non-coding(lnc) isoforms of known genes 1783 54.96354 6
Osa01LNT0006800.1 1 Osa01LNG0006800 5103265-5108946 intergenetic lncRNA (lincRNA) 1257 43.91408 2
Osa01LNT0006800.2 1 Osa01LNG0006800 5103265-5108946 intergenetic lncRNA (lincRNA) 859 50.29104 3