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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0243100.1 3 Osa03LNG0243100 35259526-35264535 long non-coding(lnc) isoforms of known genes 1855 46.41509 10
Osa03LNT0243100.2 3 Osa03LNG0243100 35259526-35264535 long non-coding(lnc) isoforms of known genes 1859 46.42281 10
Osa03LNT0243200.1 3 Osa03LNG0243200 35294218-35295556 intergenetic lncRNA (lincRNA) 729 56.65295 2
Osa03LNT0243300.1 3 Osa03LNG0243300 35303536-35305507 long non-coding(lnc) isoforms of known genes 1600 43.875 4
Osa03LNT0243400.1 3 Osa03LNG0243400 35312453-35317359 long non-coding(lnc) isoforms of known genes 3543 50.26813 10
Osa03LNT0243500.1 3 Osa03LNG0243500 35335192-35344429 long non-coding(lnc) isoforms of known genes 3487 44.30743 12
Osa03LNT0243700.3 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2438 48.5644 10
Osa03LNT0243700.4 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2435 50.55441 10
Osa03LNT0243700.1 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2077 49.15744 11
Osa03LNT0243700.2 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2086 49.23298 11
Osa03LNT0197700.2 3 Osa03LNG0197700 3539613-3550830 long non-coding(lnc) isoforms of known genes 5477 48.03725 14
Osa03LNT0197700.1 3 Osa03LNG0197700 3539613-3550830 long non-coding(lnc) isoforms of known genes 5468 48.02487 14
Osa03LNT0243600.1 3 Osa03LNG0243600 35405850-35407271 intergenetic lncRNA (lincRNA) 694 49.27954 3
Osa03LNT0243800.1 3 Osa03LNG0243800 35414104-35416004 long non-coding(lnc) isoforms of known genes 1461 51.47159 3
Osa03LNT0243900.2 3 Osa03LNG0243900 35431583-35432455 intergenetic lncRNA (lincRNA) 497 51.91147 2
Osa03LNT0243900.1 3 Osa03LNG0243900 35431583-35432455 intergenetic lncRNA (lincRNA) 873 46.5063 1
Osa03LNT0244000.2 3 Osa03LNG0244000 35446442-35452429 long non-coding(lnc) isoforms of known genes 1575 48.38095 13
Osa03LNT0244000.1 3 Osa03LNG0244000 35446442-35452429 long non-coding(lnc) isoforms of known genes 2236 44.94633 13
Osa03LNT0244100.1 3 Osa03LNG0244100 35520662-35523888 long non-coding(lnc) isoforms of known genes 1467 52.01091 10
Osa03LNT0244200.1 3 Osa03LNG0244200 35537944-35543282 intergenetic lncRNA (lincRNA) 1499 47.8986 4
Osa03LNT0244400.2 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 3367 44.37184 16
Osa03LNT0244400.1 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2641 46.98978 18
Osa03LNT0244400.3 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2956 40.39242 15
Osa03LNT0244400.4 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2634 46.96279 18
Osa03LNT0244300.1 3 Osa03LNG0244300 35581845-35582419 intergenetic lncRNA (lincRNA) 575 57.04348 1
Osa03LNT0472900.1 3 Osa03LNG0472900 35618227-35618545 intergenetic lncRNA (lincRNA) 319 49.84326 1
Osa03LNT0244500.1 3 Osa03LNG0244500 35619296-35620252 intergenetic lncRNA (lincRNA) 957 54.02299 1
Osa03LNT0244600.1 3 Osa03LNG0244600 35710302-35715111 intergenetic lncRNA (lincRNA) 3717 43.09927 3
Osa03LNT0244700.1 3 Osa03LNG0244700 35769862-35772247 long non-coding(lnc) isoforms of known genes 2313 47.51405 2
Osa03LNT0244800.1 3 Osa03LNG0244800 35908721-35911694 long non-coding(lnc) isoforms of known genes 2488 47.95016 4
Osa03LNT0244900.1 3 Osa03LNG0244900 35979829-35982389 long non-coding(lnc) isoforms of known genes 1635 46.66667 6
Osa03LNT0245000.1 3 Osa03LNG0245000 35985944-35986872 sense lncRNA 636 69.18239 2
Osa03LNT0245100.2 3 Osa03LNG0245100 36001958-36007469 long non-coding(lnc) isoforms of known genes 3663 42.47884 8
Osa03LNT0245100.1 3 Osa03LNG0245100 36001958-36007469 long non-coding(lnc) isoforms of known genes 2457 44.60724 7
Osa03LNT0193400.1 3 Osa03LNG0193400 361897-367014 long non-coding(lnc) isoforms of known genes 3334 41.90162 7
Osa03LNT0193400.2 3 Osa03LNG0193400 361897-367014 long non-coding(lnc) isoforms of known genes 3510 41.79487 7
Osa03LNT0245200.1 3 Osa03LNG0245200 36273417-36278548 long non-coding(lnc) isoforms of known genes 2958 48.74915 10
Osa03LNT0245300.1 3 Osa03LNG0245300 36278570-36278775 intergenetic lncRNA (lincRNA) 206 43.20388 1
Osa03LNT0245400.2 3 Osa03LNG0245400 36281110-36282366 Antisense lncRNA 317 51.1041 2
Osa03LNT0245400.1 3 Osa03LNG0245400 36281110-36282366 Antisense lncRNA 288 51.73611 3
Osa03LNT0245500.3 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1459 43.9342 8
Osa03LNT0245500.1 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1420 44.08451 9
Osa03LNT0245500.2 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1326 44.87179 9
Osa03LNT0245600.1 3 Osa03LNG0245600 36402736-36405837 sense lncRNA 2171 53.10917 8
Osa03LNT0197800.2 3 Osa03LNG0197800 3683172-3685295 long non-coding(lnc) isoforms of known genes 1608 47.07711 5
Osa03LNT0197800.1 3 Osa03LNG0197800 3683172-3685295 long non-coding(lnc) isoforms of known genes 1700 46.76471 4
Osa03LNT0197900.1 3 Osa03LNG0197900 3717384-3721105 long non-coding(lnc) isoforms of known genes 1800 45.83333 9
Osa03LNT0198000.2 3 Osa03LNG0198000 3747934-3750546 long non-coding(lnc) isoforms of known genes 845 52.42604 3
Osa03LNT0198000.1 3 Osa03LNG0198000 3747934-3750546 long non-coding(lnc) isoforms of known genes 750 54.13333 3
Osa03LNT0198100.2 3 Osa03LNG0198100 3760652-3762293 long non-coding(lnc) isoforms of known genes 1097 47.67548 3