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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0198100.1 3 Osa03LNG0198100 3760652-3762293 long non-coding(lnc) isoforms of known genes 1504 43.94947 2
Osa03LNT0198200.1 3 Osa03LNG0198200 3767753-3771331 long non-coding(lnc) isoforms of known genes 2023 48.83836 6
Osa03LNT0198300.1 3 Osa03LNG0198300 3814379-3823323 long non-coding(lnc) isoforms of known genes 754 54.50928 4
Osa03LNT0198400.1 3 Osa03LNG0198400 3918680-3921239 intergenetic lncRNA (lincRNA) 2218 48.82777 3
Osa03LNT0198500.1 3 Osa03LNG0198500 4002089-4005420 long non-coding(lnc) isoforms of known genes 1098 49.36248 6
Osa03LNT0193500.1 3 Osa03LNG0193500 405717-410093 long non-coding(lnc) isoforms of known genes 1807 44.60432 10
Osa03LNT0198700.1 3 Osa03LNG0198700 4119985-4122323 long non-coding(lnc) isoforms of known genes 1564 44.05371 5
Osa03LNT0198600.1 3 Osa03LNG0198600 4137050-4146632 long non-coding(lnc) isoforms of known genes 913 60.56955 4
Osa03LNT0198800.2 3 Osa03LNG0198800 4217189-4219023 long non-coding(lnc) isoforms of known genes 1474 51.89959 4
Osa03LNT0198800.1 3 Osa03LNG0198800 4217189-4219023 long non-coding(lnc) isoforms of known genes 1325 53.96226 5
Osa03LNT0198900.1 3 Osa03LNG0198900 4384108-4390364 long non-coding(lnc) isoforms of known genes 2158 45.64411 15
Osa03LNT0199000.1 3 Osa03LNG0199000 4407226-4408457 Antisense lncRNA 732 47.13115 6
Osa03LNT0199100.1 3 Osa03LNG0199100 4472110-4476128 long non-coding(lnc) isoforms of known genes 2377 52.7135 5
Osa03LNT0199200.1 3 Osa03LNG0199200 4584427-4585764 sense lncRNA 1258 50.9539 2
Osa03LNT0199300.1 3 Osa03LNG0199300 4682466-4685170 long non-coding(lnc) isoforms of known genes 1514 55.15192 9
Osa03LNT0193600.1 3 Osa03LNG0193600 471470-476757 long non-coding(lnc) isoforms of known genes 1746 47.30813 15
Osa03LNT0199400.1 3 Osa03LNG0199400 4720710-4724059 long non-coding(lnc) isoforms of known genes 2247 46.06142 7
Osa03LNT0199500.2 3 Osa03LNG0199500 4726165-4733998 long non-coding(lnc) isoforms of known genes 4822 43.09415 12
Osa03LNT0199500.1 3 Osa03LNG0199500 4726165-4733998 long non-coding(lnc) isoforms of known genes 3620 45.1105 13
Osa03LNT0199600.1 3 Osa03LNG0199600 4941038-4945558 long non-coding(lnc) isoforms of known genes 2077 43.76505 9
Osa03LNT0199700.1 3 Osa03LNG0199700 4951886-4953948 sense lncRNA 1989 44.09251 2
Osa03LNT0199800.1 3 Osa03LNG0199800 4954143-4955126 long non-coding(lnc) isoforms of known genes 698 43.40974 4
Osa03LNT0199900.1 3 Osa03LNG0199900 4956308-4959448 long non-coding(lnc) isoforms of known genes 1228 62.78502 6
Osa03LNT0463100.1 3 Osa03LNG0463100 5066010-5066271 intergenetic lncRNA (lincRNA) 262 42.74809 1
Osa03LNT0200000.1 3 Osa03LNG0200000 5085634-5090341 long non-coding(lnc) isoforms of known genes 1309 43.62108 8
Osa03LNT0200100.2 3 Osa03LNG0200100 5200218-5206428 long non-coding(lnc) isoforms of known genes 2721 43.80742 8
Osa03LNT0200100.1 3 Osa03LNG0200100 5200218-5206428 long non-coding(lnc) isoforms of known genes 4215 46.66667 12
Osa03LNT0200200.1 3 Osa03LNG0200200 5297336-5301348 long non-coding(lnc) isoforms of known genes 2364 43.99323 12
Osa03LNT0200300.1 3 Osa03LNG0200300 5352944-5357283 long non-coding(lnc) isoforms of known genes 1661 49.48826 8
Osa03LNT0200400.1 3 Osa03LNG0200400 5393933-5396976 long non-coding(lnc) isoforms of known genes 2767 42.82617 3
Osa03LNT0200500.1 3 Osa03LNG0200500 5441845-5444188 long non-coding(lnc) isoforms of known genes 2023 56.79684 4
Osa03LNT0200600.1 3 Osa03LNG0200600 5457946-5458155 Antisense lncRNA 210 49.04762 1
Osa03LNT0200700.1 3 Osa03LNG0200700 5548562-5550621 Antisense lncRNA 291 42.26804 3
Osa03LNT0200800.1 3 Osa03LNG0200800 5573373-5576434 long non-coding(lnc) isoforms of known genes 914 56.67396 6
Osa03LNT0200900.1 3 Osa03LNG0200900 5665269-5665995 intergenetic lncRNA (lincRNA) 727 56.39615 1
Osa03LNT0201000.1 3 Osa03LNG0201000 5692698-5698517 intergenetic lncRNA (lincRNA) 1065 49.67136 3
Osa03LNT0201100.2 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 595 46.38655 2
Osa03LNT0201100.1 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 1042 41.07486 2
Osa03LNT0201100.3 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 1703 49.03112 2
Osa03LNT0201300.3 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3126 46.54511 14
Osa03LNT0201300.2 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3221 46.53834 14
Osa03LNT0201300.1 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3188 46.95734 14
Osa03LNT0201300.5 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3208 46.38404 14
Osa03LNT0201300.4 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3006 47.93746 14
Osa03LNT0201200.1 3 Osa03LNG0201200 5779625-5789221 long non-coding(lnc) isoforms of known genes 4934 46.37211 9
Osa03LNT0201400.1 3 Osa03LNG0201400 5814375-5816687 long non-coding(lnc) isoforms of known genes 1224 44.93464 6
Osa03LNT0201500.1 3 Osa03LNG0201500 5829016-5835122 long non-coding(lnc) isoforms of known genes 3446 45.67615 5
Osa03LNT0201600.1 3 Osa03LNG0201600 5939190-5939701 intergenetic lncRNA (lincRNA) 430 69.76744 2
Osa03LNT0201700.1 3 Osa03LNG0201700 5955407-5960532 long non-coding(lnc) isoforms of known genes 1833 51.82761 14
Osa03LNT0201700.2 3 Osa03LNG0201700 5955407-5960532 long non-coding(lnc) isoforms of known genes 1730 50.92486 15