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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0207700.1 3 Osa03LNG0207700 9700521-9703425 long non-coding(lnc) isoforms of known genes 1053 47.86325 4
Osa03LNT0207800.2 3 Osa03LNG0207800 9759666-9764048 long non-coding(lnc) isoforms of known genes 3921 45.34558 9
Osa03LNT0207800.1 3 Osa03LNG0207800 9759666-9764048 long non-coding(lnc) isoforms of known genes 2205 43.53741 6
Osa03LNT0207900.1 3 Osa03LNG0207900 9799309-9822037 long non-coding(lnc) isoforms of known genes 2793 47.65485 12
Osa03LNT0208000.2 3 Osa03LNG0208000 9852813-9856006 long non-coding(lnc) isoforms of known genes 1549 52.67915 7
Osa03LNT0208000.1 3 Osa03LNG0208000 9852813-9856006 long non-coding(lnc) isoforms of known genes 2015 49.77667 6
Osa03LNT0208100.1 3 Osa03LNG0208100 9904631-9905849 long non-coding(lnc) isoforms of known genes 763 53.86632 6
Osa03LNT0464700.1 3 Osa03LNG0464700 9942279-9942494 intergenetic lncRNA (lincRNA) 216 48.61111 1
Osa04LNT0253400.1 4 Osa04LNG0253400 10000971-10002120 intergenetic lncRNA (lincRNA) 1150 34.43478 1
Osa04LNT0253500.1 4 Osa04LNG0253500 10003035-10003910 intergenetic lncRNA (lincRNA) 876 49.54338 1
Osa04LNT0253900.1 4 Osa04LNG0253900 10470563-10472410 sense lncRNA 526 49.80989 2
Osa04LNT0487000.1 4 Osa04LNG0487000 10596106-10596305 intergenetic lncRNA (lincRNA) 200 46.5 1
Osa04LNT0487200.1 4 Osa04LNG0487200 10666798-10667071 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa04LNT0487100.1 4 Osa04LNG0487100 10666798-10667071 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa04LNT0487300.1 4 Osa04LNG0487300 10667245-10667458 intergenetic lncRNA (lincRNA) 214 39.25234 1
Osa04LNT0253800.1 4 Osa04LNG0253800 10794186-10794465 intergenetic lncRNA (lincRNA) 280 59.28571 1
Osa04LNT0254000.1 4 Osa04LNG0254000 10948128-10949438 intergenetic lncRNA (lincRNA) 1311 44.6987 1
Osa04LNT0487400.1 4 Osa04LNG0487400 11056178-11056455 intergenetic lncRNA (lincRNA) 278 25.17986 1
Osa04LNT0487500.1 4 Osa04LNG0487500 11056178-11056455 intergenetic lncRNA (lincRNA) 278 25.17986 1
Osa04LNT0487600.1 4 Osa04LNG0487600 11056823-11057083 intergenetic lncRNA (lincRNA) 261 43.29502 1
Osa04LNT0487700.1 4 Osa04LNG0487700 11068954-11069166 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa04LNT0246300.1 4 Osa04LNG0246300 1120673-1124998 long non-coding(lnc) isoforms of known genes 1503 48.43646 7
Osa04LNT0254100.1 4 Osa04LNG0254100 11255676-11259616 long non-coding(lnc) isoforms of known genes 2307 42.73949 6
Osa04LNT0254100.2 4 Osa04LNG0254100 11255676-11259616 long non-coding(lnc) isoforms of known genes 2413 42.60257 5
Osa04LNT0246400.1 4 Osa04LNG0246400 1129868-1133261 Antisense lncRNA 2279 35.58578 5
Osa04LNT0254200.1 4 Osa04LNG0254200 11316236-11328577 long non-coding(lnc) isoforms of known genes 3693 41.3485 14
Osa04LNT0487800.1 4 Osa04LNG0487800 11392911-11393185 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa04LNT0487900.1 4 Osa04LNG0487900 11392911-11393185 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa04LNT0254300.1 4 Osa04LNG0254300 11425702-11430464 long non-coding(lnc) isoforms of known genes 1124 58.27402 7
Osa04LNT0254300.2 4 Osa04LNG0254300 11425702-11430464 long non-coding(lnc) isoforms of known genes 2244 46.61319 4
Osa04LNT0254400.1 4 Osa04LNG0254400 11450659-11452631 long non-coding(lnc) isoforms of known genes 944 56.03814 3
Osa04LNT0246500.1 4 Osa04LNG0246500 1148896-1151980 long non-coding(lnc) isoforms of known genes 1751 50.54255 7
Osa04LNT0488000.1 4 Osa04LNG0488000 11530321-11530574 intergenetic lncRNA (lincRNA) 254 29.13386 1
Osa04LNT0488100.1 4 Osa04LNG0488100 11530321-11530576 intergenetic lncRNA (lincRNA) 256 29.29688 1
Osa04LNT0254500.1 4 Osa04LNG0254500 11680998-11684694 long non-coding(lnc) isoforms of known genes 1896 49.94726 3
Osa04LNT0254600.1 4 Osa04LNG0254600 11801071-11814969 long non-coding(lnc) isoforms of known genes 1783 49.85979 12
Osa04LNT0483300.1 4 Osa04LNG0483300 1190098-1190305 intergenetic lncRNA (lincRNA) 208 26.44231 1
Osa04LNT0483500.1 4 Osa04LNG0483500 1199638-1199882 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa04LNT0483400.1 4 Osa04LNG0483400 1199638-1199882 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa04LNT0254700.1 4 Osa04LNG0254700 12032983-12037969 long non-coding(lnc) isoforms of known genes 2244 42.24599 4
Osa04LNT0254800.1 4 Osa04LNG0254800 12205352-12210909 intergenetic lncRNA (lincRNA) 5558 44.80029 1
Osa04LNT0254900.1 4 Osa04LNG0254900 12220887-12228754 long non-coding(lnc) isoforms of known genes 1552 45.61856 12
Osa04LNT0488200.1 4 Osa04LNG0488200 12334650-12334923 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa04LNT0488300.1 4 Osa04LNG0488300 12334650-12334923 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa04LNT0483600.1 4 Osa04LNG0483600 1242182-1242394 intergenetic lncRNA (lincRNA) 213 50.23474 1
Osa04LNT0488400.1 4 Osa04LNG0488400 12557192-12557465 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa04LNT0488500.1 4 Osa04LNG0488500 12557192-12557465 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa04LNT0488600.1 4 Osa04LNG0488600 12616922-12617176 intergenetic lncRNA (lincRNA) 255 27.05882 1
Osa04LNT0488700.1 4 Osa04LNG0488700 12616922-12617176 intergenetic lncRNA (lincRNA) 255 27.05882 1
Osa04LNT0488800.1 4 Osa04LNG0488800 12640535-12640839 intergenetic lncRNA (lincRNA) 305 39.67213 1