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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0247400.1 4 Osa04LNG0247400 1835415-1839583 long non-coding(lnc) isoforms of known genes 1253 48.28412 7
Osa04LNT0259300.2 4 Osa04LNG0259300 18382740-18387907 long non-coding(lnc) isoforms of known genes 745 41.47651 7
Osa04LNT0259300.1 4 Osa04LNG0259300 18382740-18387907 long non-coding(lnc) isoforms of known genes 1462 52.39398 11
Osa04LNT0259400.1 4 Osa04LNG0259400 18478706-18483241 intergenetic lncRNA (lincRNA) 2436 47.53695 5
Osa04LNT0247500.1 4 Osa04LNG0247500 1848746-1851608 intergenetic lncRNA (lincRNA) 1861 47.44761 3
Osa04LNT0259500.1 4 Osa04LNG0259500 18506759-18507776 intergenetic lncRNA (lincRNA) 569 49.73638 2
Osa04LNT0259600.1 4 Osa04LNG0259600 18551379-18553819 long non-coding(lnc) isoforms of known genes 1754 51.48233 6
Osa04LNT0259700.1 4 Osa04LNG0259700 18602863-18609094 long non-coding(lnc) isoforms of known genes 1864 46.29828 3
Osa04LNT0259700.2 4 Osa04LNG0259700 18602863-18609094 long non-coding(lnc) isoforms of known genes 3383 40.52616 3
Osa04LNT0492800.1 4 Osa04LNG0492800 18762025-18762229 intergenetic lncRNA (lincRNA) 205 23.90244 1
Osa04LNT0492900.1 4 Osa04LNG0492900 18921029-18921235 intergenetic lncRNA (lincRNA) 207 30.91787 1
Osa04LNT0493000.1 4 Osa04LNG0493000 18921029-18921235 intergenetic lncRNA (lincRNA) 207 30.91787 1
Osa04LNT0493100.1 4 Osa04LNG0493100 19062994-19063251 intergenetic lncRNA (lincRNA) 258 42.24806 1
Osa04LNT0259800.1 4 Osa04LNG0259800 19148767-19151886 long non-coding(lnc) isoforms of known genes 1092 49.54212 7
Osa04LNT0493200.1 4 Osa04LNG0493200 19162794-19163025 intergenetic lncRNA (lincRNA) 232 57.75862 1
Osa04LNT0259900.1 4 Osa04LNG0259900 19240278-19245527 long non-coding(lnc) isoforms of known genes 2408 49.12791 9
Osa04LNT0493300.1 4 Osa04LNG0493300 19255115-19255358 intergenetic lncRNA (lincRNA) 244 27.45902 1
Osa04LNT0260000.1 4 Osa04LNG0260000 19321888-19322315 intergenetic lncRNA (lincRNA) 428 62.61682 1
Osa04LNT0493400.1 4 Osa04LNG0493400 19357631-19357844 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa04LNT0260100.1 4 Osa04LNG0260100 19398381-19403748 long non-coding(lnc) isoforms of known genes 2756 43.54136 11
Osa04LNT0260200.1 4 Osa04LNG0260200 19498820-19504644 long non-coding(lnc) isoforms of known genes 1916 45.35491 13
Osa04LNT0260200.2 4 Osa04LNG0260200 19498820-19504644 long non-coding(lnc) isoforms of known genes 2182 43.6297 12
Osa04LNT0493500.1 4 Osa04LNG0493500 19531248-19531507 intergenetic lncRNA (lincRNA) 260 41.15385 1
Osa04LNT0493600.1 4 Osa04LNG0493600 19532370-19532615 intergenetic lncRNA (lincRNA) 246 26.01626 1
Osa04LNT0483800.1 4 Osa04LNG0483800 1959098-1959303 intergenetic lncRNA (lincRNA) 206 30.58252 1
Osa04LNT0260300.1 4 Osa04LNG0260300 19612844-19615470 sense lncRNA 951 58.88538 3
Osa04LNT0493700.1 4 Osa04LNG0493700 19636207-19636481 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa04LNT0493800.1 4 Osa04LNG0493800 19636207-19636481 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa04LNT0260400.1 4 Osa04LNG0260400 19693037-19694280 long non-coding(lnc) isoforms of known genes 839 51.96663 3
Osa04LNT0260500.1 4 Osa04LNG0260500 19695374-19709946 long non-coding(lnc) isoforms of known genes 3917 44.93235 29
Osa04LNT0260500.3 4 Osa04LNG0260500 19695374-19709946 long non-coding(lnc) isoforms of known genes 4013 44.80439 29
Osa04LNT0260500.2 4 Osa04LNG0260500 19695374-19709946 long non-coding(lnc) isoforms of known genes 3146 38.7794 22
Osa04LNT0260600.1 4 Osa04LNG0260600 19835208-19836886 long non-coding(lnc) isoforms of known genes 1543 53.20804 2
Osa04LNT0260700.1 4 Osa04LNG0260700 19851101-19858972 long non-coding(lnc) isoforms of known genes 1929 47.79679 14
Osa04LNT0260800.1 4 Osa04LNG0260800 19987364-19988271 intergenetic lncRNA (lincRNA) 908 50.88106 1
Osa04LNT0261000.1 4 Osa04LNG0261000 20021368-20025141 long non-coding(lnc) isoforms of known genes 2351 41.98214 6
Osa04LNT0260900.1 4 Osa04LNG0260900 20046002-20046917 long non-coding(lnc) isoforms of known genes 818 54.27873 2
Osa04LNT0261100.1 4 Osa04LNG0261100 20117097-20119136 long non-coding(lnc) isoforms of known genes 1270 42.59843 4
Osa04LNT0261100.2 4 Osa04LNG0261100 20117097-20119136 long non-coding(lnc) isoforms of known genes 1786 40.14558 3
Osa04LNT0261200.1 4 Osa04LNG0261200 20143778-20145831 sense lncRNA 1268 63.24921 2
Osa04LNT0261300.1 4 Osa04LNG0261300 20224698-20226415 long non-coding(lnc) isoforms of known genes 664 48.49398 3
Osa04LNT0261400.1 4 Osa04LNG0261400 20240211-20243282 long non-coding(lnc) isoforms of known genes 992 49.69758 9
Osa04LNT0261500.1 4 Osa04LNG0261500 20259518-20261564 sense lncRNA 1828 49.45295 2
Osa04LNT0261600.1 4 Osa04LNG0261600 20310155-20321095 long non-coding(lnc) isoforms of known genes 943 55.99152 7
Osa04LNT0261700.2 4 Osa04LNG0261700 20405745-20410288 long non-coding(lnc) isoforms of known genes 2101 52.54641 9
Osa04LNT0261700.1 4 Osa04LNG0261700 20405745-20410288 long non-coding(lnc) isoforms of known genes 2945 48.14941 8
Osa04LNT0483900.1 4 Osa04LNG0483900 2044895-2045155 intergenetic lncRNA (lincRNA) 261 39.84674 1
Osa04LNT0484000.1 4 Osa04LNG0484000 2045669-2045913 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa04LNT0261800.1 4 Osa04LNG0261800 20549993-20555065 long non-coding(lnc) isoforms of known genes 1818 47.90979 15
Osa04LNT0261900.1 4 Osa04LNG0261900 20661060-20661752 sense lncRNA 693 47.61905 1