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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0269300.1 4 Osa04LNG0269300 24567146-24571583 long non-coding(lnc) isoforms of known genes 3080 48.99351 6
Osa04LNT0269300.3 4 Osa04LNG0269300 24567146-24571583 long non-coding(lnc) isoforms of known genes 3180 48.49057 6
Osa04LNT0269400.1 4 Osa04LNG0269400 24648004-24649307 sense lncRNA 1175 59.23404 2
Osa04LNT0269500.1 4 Osa04LNG0269500 24655178-24660067 long non-coding(lnc) isoforms of known genes 1177 52.93118 6
Osa04LNT0269600.1 4 Osa04LNG0269600 24672491-24673193 intergenetic lncRNA (lincRNA) 703 54.33855 1
Osa04LNT0269800.4 4 Osa04LNG0269800 24719614-24722706 long non-coding(lnc) isoforms of known genes 1811 43.78796 4
Osa04LNT0269800.1 4 Osa04LNG0269800 24719614-24722706 long non-coding(lnc) isoforms of known genes 1201 50.1249 5
Osa04LNT0269800.2 4 Osa04LNG0269800 24719614-24722706 long non-coding(lnc) isoforms of known genes 1156 50.43253 5
Osa04LNT0269800.3 4 Osa04LNG0269800 24719614-24722706 long non-coding(lnc) isoforms of known genes 1163 49.69905 5
Osa04LNT0269700.1 4 Osa04LNG0269700 24769728-24772998 sense lncRNA 1236 58.49515 4
Osa04LNT0269900.1 4 Osa04LNG0269900 24775540-24779534 sense lncRNA 1295 49.11197 7
Osa04LNT0270000.1 4 Osa04LNG0270000 24810332-24816262 long non-coding(lnc) isoforms of known genes 1310 65.26718 4
Osa04LNT0270100.2 4 Osa04LNG0270100 24841362-24843684 long non-coding(lnc) isoforms of known genes 1068 48.8764 4
Osa04LNT0270100.1 4 Osa04LNG0270100 24841362-24843684 long non-coding(lnc) isoforms of known genes 956 50.20921 5
Osa04LNT0270200.1 4 Osa04LNG0270200 24846908-24853939 long non-coding(lnc) isoforms of known genes 2877 46.26347 15
Osa04LNT0270300.1 4 Osa04LNG0270300 24936065-24938755 long non-coding(lnc) isoforms of known genes 1606 49.4396 6
Osa04LNT0270400.1 4 Osa04LNG0270400 24943121-24945408 long non-coding(lnc) isoforms of known genes 794 54.03023 5
Osa04LNT0270500.1 4 Osa04LNG0270500 24946272-24950195 long non-coding(lnc) isoforms of known genes 2651 44.36062 5
Osa04LNT0270600.1 4 Osa04LNG0270600 24983395-24986224 intergenetic lncRNA (lincRNA) 751 47.53662 3
Osa04LNT0270700.1 4 Osa04LNG0270700 25008080-25010015 long non-coding(lnc) isoforms of known genes 712 49.4382 4
Osa04LNT0270800.1 4 Osa04LNG0270800 25025234-25025965 intergenetic lncRNA (lincRNA) 732 48.22404 1
Osa04LNT0270900.1 4 Osa04LNG0270900 25060063-25061227 intergenetic lncRNA (lincRNA) 638 52.03762 4
Osa04LNT0271000.1 4 Osa04LNG0271000 25127343-25128415 long non-coding(lnc) isoforms of known genes 712 39.32584 2
Osa04LNT0271100.2 4 Osa04LNG0271100 25143868-25149592 long non-coding(lnc) isoforms of known genes 2439 45.26445 11
Osa04LNT0271100.1 4 Osa04LNG0271100 25143868-25149592 long non-coding(lnc) isoforms of known genes 2436 45.2381 11
Osa04LNT0271100.3 4 Osa04LNG0271100 25143868-25149592 long non-coding(lnc) isoforms of known genes 2495 44.52906 8
Osa04LNT0271200.1 4 Osa04LNG0271200 25221295-25227713 intergenetic lncRNA (lincRNA) 858 40.90909 4
Osa04LNT0271300.2 4 Osa04LNG0271300 25253913-25258515 long non-coding(lnc) isoforms of known genes 3592 45.79621 3
Osa04LNT0271300.1 4 Osa04LNG0271300 25253913-25258515 long non-coding(lnc) isoforms of known genes 3764 46.8916 3
Osa04LNT0271400.1 4 Osa04LNG0271400 25314273-25320440 long non-coding(lnc) isoforms of known genes 3482 44.28489 6
Osa04LNT0271500.1 4 Osa04LNG0271500 25323826-25337446 long non-coding(lnc) isoforms of known genes 3221 41.97454 20
Osa04LNT0271600.2 4 Osa04LNG0271600 25349798-25361082 long non-coding(lnc) isoforms of known genes 5518 44.83509 20
Osa04LNT0271600.1 4 Osa04LNG0271600 25349798-25361082 long non-coding(lnc) isoforms of known genes 4834 46.02813 21
Osa04LNT0271700.1 4 Osa04LNG0271700 25372442-25374528 long non-coding(lnc) isoforms of known genes 996 48.79518 8
Osa04LNT0271800.1 4 Osa04LNG0271800 25405125-25407743 long non-coding(lnc) isoforms of known genes 1324 59.36556 4
Osa04LNT0272000.1 4 Osa04LNG0272000 25424081-25429239 long non-coding(lnc) isoforms of known genes 2717 53.51491 2
Osa04LNT0271900.1 4 Osa04LNG0271900 25435294-25438948 long non-coding(lnc) isoforms of known genes 1719 50.4363 4
Osa04LNT0272100.1 4 Osa04LNG0272100 25469346-25471511 long non-coding(lnc) isoforms of known genes 1159 47.28214 3
Osa04LNT0272200.1 4 Osa04LNG0272200 25474092-25486804 long non-coding(lnc) isoforms of known genes 5257 39.43314 21
Osa04LNT0272300.1 4 Osa04LNG0272300 25563419-25565153 long non-coding(lnc) isoforms of known genes 1286 48.75583 5
Osa04LNT0272400.1 4 Osa04LNG0272400 25573704-25579677 long non-coding(lnc) isoforms of known genes 2677 44.34068 10
Osa04LNT0272500.1 4 Osa04LNG0272500 25608248-25611089 long non-coding(lnc) isoforms of known genes 1649 48.39297 10
Osa04LNT0494700.1 4 Osa04LNG0494700 25623667-25623890 intergenetic lncRNA (lincRNA) 224 25.44643 1
Osa04LNT0272600.1 4 Osa04LNG0272600 25631891-25636818 long non-coding(lnc) isoforms of known genes 3550 47.71831 4
Osa04LNT0272700.1 4 Osa04LNG0272700 25681399-25685998 long non-coding(lnc) isoforms of known genes 1015 50.24631 6
Osa04LNT0272800.1 4 Osa04LNG0272800 25686084-25694068 Antisense lncRNA 726 50.13774 7
Osa04LNT0272900.1 4 Osa04LNG0272900 25727506-25731629 long non-coding(lnc) isoforms of known genes 1815 49.2562 14
Osa04LNT0273000.1 4 Osa04LNG0273000 25898230-25902353 long non-coding(lnc) isoforms of known genes 1498 46.46195 12
Osa04LNT0273100.1 4 Osa04LNG0273100 25911126-25915262 long non-coding(lnc) isoforms of known genes 3584 40.6529 4
Osa04LNT0273400.1 4 Osa04LNG0273400 26025005-26026867 long non-coding(lnc) isoforms of known genes 940 39.46809 3