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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0280100.2 4 Osa04LNG0280100 30952520-30957572 long non-coding(lnc) isoforms of known genes 3472 45.2765 9
Osa04LNT0280200.1 4 Osa04LNG0280200 31007519-31011903 long non-coding(lnc) isoforms of known genes 1933 41.64511 12
Osa04LNT0280300.1 4 Osa04LNG0280300 31064108-31068847 long non-coding(lnc) isoforms of known genes 1175 51.82979 7
Osa04LNT0280400.1 4 Osa04LNG0280400 31098634-31103034 long non-coding(lnc) isoforms of known genes 1447 50.65653 10
Osa04LNT0280500.1 4 Osa04LNG0280500 31108946-31113437 long non-coding(lnc) isoforms of known genes 2011 49.42815 15
Osa04LNT0280600.1 4 Osa04LNG0280600 31250190-31251076 Antisense lncRNA 457 43.32604 5
Osa04LNT0280700.1 4 Osa04LNG0280700 31254850-31257917 long non-coding(lnc) isoforms of known genes 1672 49.88038 9
Osa04LNT0280800.1 4 Osa04LNG0280800 31263110-31269852 long non-coding(lnc) isoforms of known genes 3658 47.64899 21
Osa04LNT0280800.2 4 Osa04LNG0280800 31263110-31269852 long non-coding(lnc) isoforms of known genes 3759 47.85847 23
Osa04LNT0280900.1 4 Osa04LNG0280900 31285366-31294894 long non-coding(lnc) isoforms of known genes 3340 42.78443 21
Osa04LNT0281000.1 4 Osa04LNG0281000 31308749-31315804 long non-coding(lnc) isoforms of known genes 3224 45.90571 23
Osa04LNT0281100.1 4 Osa04LNG0281100 31318538-31327912 long non-coding(lnc) isoforms of known genes 3946 44.5261 22
Osa04LNT0281200.1 4 Osa04LNG0281200 31401402-31402260 Antisense lncRNA 689 41.65457 3
Osa04LNT0281300.1 4 Osa04LNG0281300 31502901-31515441 long non-coding(lnc) isoforms of known genes 5619 44.10037 29
Osa04LNT0281300.2 4 Osa04LNG0281300 31502901-31515441 long non-coding(lnc) isoforms of known genes 5522 43.6255 29
Osa04LNT0281400.1 4 Osa04LNG0281400 31609425-31610717 long non-coding(lnc) isoforms of known genes 1032 54.65116 4
Osa04LNT0281500.1 4 Osa04LNG0281500 31645305-31665410 long non-coding(lnc) isoforms of known genes 1800 56.88889 4
Osa04LNT0281600.1 4 Osa04LNG0281600 31669220-31674594 long non-coding(lnc) isoforms of known genes 2585 48.51064 12
Osa04LNT0281700.1 4 Osa04LNG0281700 31788464-31797495 long non-coding(lnc) isoforms of known genes 6061 39.33344 11
Osa04LNT0281800.1 4 Osa04LNG0281800 31831245-31836454 long non-coding(lnc) isoforms of known genes 2190 47.3516 8
Osa04LNT0281900.1 4 Osa04LNG0281900 31900217-31907114 long non-coding(lnc) isoforms of known genes 3384 58.71749 12
Osa04LNT0282000.1 4 Osa04LNG0282000 31959627-31961981 long non-coding(lnc) isoforms of known genes 1842 48.20847 3
Osa04LNT0282100.1 4 Osa04LNG0282100 32019411-32022749 long non-coding(lnc) isoforms of known genes 1018 49.80354 5
Osa04LNT0282200.1 4 Osa04LNG0282200 32183396-32188698 long non-coding(lnc) isoforms of known genes 439 60.13667 4
Osa04LNT0282300.1 4 Osa04LNG0282300 32185365-32187363 long non-coding(lnc) isoforms of known genes 1914 51.82863 2
Osa04LNT0495500.1 4 Osa04LNG0495500 32222796-32223000 intergenetic lncRNA (lincRNA) 205 24.87805 1
Osa04LNT0282400.1 4 Osa04LNG0282400 32240154-32240931 Antisense lncRNA 243 47.73663 3
Osa04LNT0282400.2 4 Osa04LNG0282400 32240154-32240931 Antisense lncRNA 398 63.06533 3
Osa04LNT0282500.1 4 Osa04LNG0282500 32278194-32281408 long non-coding(lnc) isoforms of known genes 1516 47.09763 6
Osa04LNT0495600.1 4 Osa04LNG0495600 32358112-32358347 intronic lncRNA 236 29.23729 1
Osa04LNT0282600.1 4 Osa04LNG0282600 32378707-32382044 long non-coding(lnc) isoforms of known genes 2784 48.02443 6
Osa04LNT0282700.1 4 Osa04LNG0282700 32390377-32392459 sense lncRNA 1946 57.91367 2
Osa04LNT0282800.1 4 Osa04LNG0282800 32459623-32460498 long non-coding(lnc) isoforms of known genes 779 54.30039 2
Osa04LNT0282900.1 4 Osa04LNG0282900 32473525-32474261 intergenetic lncRNA (lincRNA) 623 47.35152 2
Osa04LNT0283000.1 4 Osa04LNG0283000 32483088-32485898 long non-coding(lnc) isoforms of known genes 1382 50.79595 11
Osa04LNT0283100.1 4 Osa04LNG0283100 32582189-32585691 long non-coding(lnc) isoforms of known genes 1249 47.07766 10
Osa04LNT0283300.1 4 Osa04LNG0283300 32634024-32637813 long non-coding(lnc) isoforms of known genes 1121 47.90366 6
Osa04LNT0283200.1 4 Osa04LNG0283200 32671919-32675706 long non-coding(lnc) isoforms of known genes 3265 49.73966 6
Osa04LNT0484700.1 4 Osa04LNG0484700 3272757-3273031 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa04LNT0484800.1 4 Osa04LNG0484800 3272757-3273031 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa04LNT0283400.2 4 Osa04LNG0283400 32752500-32754677 Antisense lncRNA 598 53.51171 5
Osa04LNT0283400.1 4 Osa04LNG0283400 32752500-32754677 Antisense lncRNA 505 52.67327 4
Osa04LNT0283500.2 4 Osa04LNG0283500 32801074-32813162 long non-coding(lnc) isoforms of known genes 5112 45.89202 19
Osa04LNT0283500.1 4 Osa04LNG0283500 32801074-32813162 long non-coding(lnc) isoforms of known genes 5617 47.58768 19
Osa04LNT0283600.1 4 Osa04LNG0283600 32868115-32871622 long non-coding(lnc) isoforms of known genes 1917 46.89619 4
Osa04LNT0283600.2 4 Osa04LNG0283600 32868115-32871622 long non-coding(lnc) isoforms of known genes 1301 52.57494 5
Osa04LNT0283600.3 4 Osa04LNG0283600 32868115-32871622 long non-coding(lnc) isoforms of known genes 1001 50.54945 4
Osa04LNT0283600.4 4 Osa04LNG0283600 32868115-32871622 long non-coding(lnc) isoforms of known genes 1882 47.82147 4
Osa04LNT0283700.4 4 Osa04LNG0283700 32927309-32927649 intergenetic lncRNA (lincRNA) 572 54.54545 1
Osa04LNT0283700.1 4 Osa04LNG0283700 32927309-32927649 intergenetic lncRNA (lincRNA) 341 55.13196 1