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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0245900.1 4 Osa04LNG0245900 715787-722218 long non-coding(lnc) isoforms of known genes 1866 46.73098 12
Osa04LNT0251100.1 4 Osa04LNG0251100 7201373-7201647 intergenetic lncRNA (lincRNA) 275 41.45455 1
Osa04LNT0251200.1 4 Osa04LNG0251200 7380329-7381190 intergenetic lncRNA (lincRNA) 862 53.48028 1
Osa04LNT0483000.1 4 Osa04LNG0483000 744915-745186 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa04LNT0482900.1 4 Osa04LNG0482900 744915-745186 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa04LNT0486600.1 4 Osa04LNG0486600 7495762-7496017 intergenetic lncRNA (lincRNA) 256 25.78125 1
Osa04LNT0486500.1 4 Osa04LNG0486500 7495762-7496017 intergenetic lncRNA (lincRNA) 256 25.78125 1
Osa04LNT0251300.1 4 Osa04LNG0251300 7498137-7499038 intergenetic lncRNA (lincRNA) 902 55.32151 1
Osa04LNT0486700.1 4 Osa04LNG0486700 7602135-7602342 intergenetic lncRNA (lincRNA) 208 49.51923 1
Osa04LNT0251400.1 4 Osa04LNG0251400 7873528-7876305 long non-coding(lnc) isoforms of known genes 2090 41.05263 3
Osa04LNT0251500.1 4 Osa04LNG0251500 7891070-7891272 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa04LNT0251600.1 4 Osa04LNG0251600 7893523-7901781 long non-coding(lnc) isoforms of known genes 3834 46.81794 3
Osa04LNT0246100.1 4 Osa04LNG0246100 793567-799305 long non-coding(lnc) isoforms of known genes 2880 48.54167 3
Osa04LNT0246100.2 4 Osa04LNG0246100 793567-799305 long non-coding(lnc) isoforms of known genes 2693 49.31303 4
Osa04LNT0251700.1 4 Osa04LNG0251700 7939747-7943929 intergenetic lncRNA (lincRNA) 1214 52.22405 8
Osa04LNT0251700.2 4 Osa04LNG0251700 7939747-7943929 intergenetic lncRNA (lincRNA) 2001 45.22739 7
Osa04LNT0486800.1 4 Osa04LNG0486800 7996920-7997145 intronic lncRNA 226 49.11504 1
Osa04LNT0251800.1 4 Osa04LNG0251800 8031370-8038086 long non-coding(lnc) isoforms of known genes 6273 46.56464 2
Osa04LNT0252000.1 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 3818 45.46883 9
Osa04LNT0252000.4 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 1779 42.552 6
Osa04LNT0252000.3 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 3154 45.21243 8
Osa04LNT0252000.2 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 4260 48.35681 10
Osa04LNT0251900.1 4 Osa04LNG0251900 8117548-8126285 long non-coding(lnc) isoforms of known genes 3511 49.4446 10
Osa04LNT0252100.1 4 Osa04LNG0252100 8216513-8233268 long non-coding(lnc) isoforms of known genes 2322 44.65978 23
Osa04LNT0252200.1 4 Osa04LNG0252200 8267100-8268818 sense lncRNA 1387 63.66258 2
Osa04LNT0252300.2 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 1861 46.74906 8
Osa04LNT0252300.1 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 3796 47.18124 7
Osa04LNT0252400.1 4 Osa04LNG0252400 8307367-8314102 long non-coding(lnc) isoforms of known genes 2017 47.0005 7
Osa04LNT0252500.1 4 Osa04LNG0252500 8322670-8327520 intergenetic lncRNA (lincRNA) 747 56.89424 3
Osa04LNT0246000.1 4 Osa04LNG0246000 835516-837306 long non-coding(lnc) isoforms of known genes 539 57.88497 2
Osa04LNT0252600.1 4 Osa04LNG0252600 8588685-8594100 long non-coding(lnc) isoforms of known genes 2145 49.09091 15
Osa04LNT0483100.1 4 Osa04LNG0483100 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0483200.1 4 Osa04LNG0483200 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0252700.1 4 Osa04LNG0252700 8764579-8767163 long non-coding(lnc) isoforms of known genes 2270 41.32159 2
Osa04LNT0486900.1 4 Osa04LNG0486900 9115456-9115981 intergenetic lncRNA (lincRNA) 526 35.36122 1
Osa04LNT0252800.1 4 Osa04LNG0252800 9262698-9265370 long non-coding(lnc) isoforms of known genes 2218 46.25789 4
Osa04LNT0252900.1 4 Osa04LNG0252900 9368053-9369130 long non-coding(lnc) isoforms of known genes 957 52.87356 2
Osa04LNT0253000.1 4 Osa04LNG0253000 9376536-9388852 sense lncRNA 3517 43.87262 15
Osa04LNT0246200.1 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 538 53.90335 2
Osa04LNT0246200.2 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 595 53.44538 3
Osa04LNT0246200.3 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 1435 49.33798 3
Osa04LNT0253100.1 4 Osa04LNG0253100 9676364-9678593 sense lncRNA 776 60.69588 2
Osa04LNT0253200.1 4 Osa04LNG0253200 9687994-9689204 sense lncRNA 656 46.18902 3
Osa04LNT0253700.2 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5341 44.35499 26
Osa04LNT0253700.1 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5167 44.39714 26
Osa04LNT0253300.1 4 Osa04LNG0253300 9919847-9926446 intergenetic lncRNA (lincRNA) 513 50.87719 3
Osa04LNT0253600.1 4 Osa04LNG0253600 9939337-9956348 long non-coding(lnc) isoforms of known genes 2929 45.51041 21
Osa05LNT0291500.1 5 Osa05LNG0291500 1007909-1008429 intronic lncRNA 521 33.20537 1
Osa05LNT0291600.1 5 Osa05LNG0291600 1026087-1026890 intergenetic lncRNA (lincRNA) 499 55.11022 2
Osa05LNT0300300.1 5 Osa05LNG0300300 10266403-10269380 intergenetic lncRNA (lincRNA) 1230 52.84553 4