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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0302000.1 5 Osa05LNG0302000 13385142-13391031 long non-coding(lnc) isoforms of known genes 2547 44.91559 16
Osa05LNT0292000.1 5 Osa05LNG0292000 1340213-1341131 intergenetic lncRNA (lincRNA) 919 51.14255 1
Osa05LNT0302100.1 5 Osa05LNG0302100 13421645-13424003 sense lncRNA 1894 50.21119 2
Osa05LNT0302100.2 5 Osa05LNG0302100 13421645-13424003 sense lncRNA 1854 50.48544 2
Osa05LNT0292100.2 5 Osa05LNG0292100 1348492-1355035 long non-coding(lnc) isoforms of known genes 2108 44.02277 9
Osa05LNT0292100.1 5 Osa05LNG0292100 1348492-1355035 long non-coding(lnc) isoforms of known genes 2122 44.53346 10
Osa05LNT0302200.1 5 Osa05LNG0302200 13491695-13492286 intergenetic lncRNA (lincRNA) 592 40.87838 1
Osa05LNT0302300.1 5 Osa05LNG0302300 13511797-13521191 intergenetic lncRNA (lincRNA) 1984 36.69355 7
Osa05LNT0302500.1 5 Osa05LNG0302500 13543055-13547500 long non-coding(lnc) isoforms of known genes 1302 48.3871 8
Osa05LNT0302500.2 5 Osa05LNG0302500 13543055-13547500 long non-coding(lnc) isoforms of known genes 1321 48.06964 8
Osa05LNT0302400.1 5 Osa05LNG0302400 13554176-13556181 intergenetic lncRNA (lincRNA) 2006 53.83848 1
Osa05LNT0290300.1 5 Osa05LNG0290300 136808-143130 sense lncRNA 5659 41.03198 2
Osa05LNT0302600.1 5 Osa05LNG0302600 13709153-13711842 long non-coding(lnc) isoforms of known genes 912 62.0614 3
Osa05LNT0517900.1 5 Osa05LNG0517900 13712361-13712635 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa05LNT0518000.1 5 Osa05LNG0518000 13712361-13712635 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa05LNT0302700.1 5 Osa05LNG0302700 13755513-13763437 long non-coding(lnc) isoforms of known genes 1996 53.45691 8
Osa05LNT0302800.1 5 Osa05LNG0302800 13791123-13791973 intergenetic lncRNA (lincRNA) 851 37.01528 1
Osa05LNT0518100.1 5 Osa05LNG0518100 13792598-13792800 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa05LNT0302900.1 5 Osa05LNG0302900 13823209-13828651 long non-coding(lnc) isoforms of known genes 1315 52.69962 7
Osa05LNT0303000.2 5 Osa05LNG0303000 13939740-13946493 long non-coding(lnc) isoforms of known genes 3052 50.62254 6
Osa05LNT0303000.1 5 Osa05LNG0303000 13939740-13946493 long non-coding(lnc) isoforms of known genes 1956 47.34151 8
Osa05LNT0292200.1 5 Osa05LNG0292200 1397320-1404503 long non-coding(lnc) isoforms of known genes 3316 43.39566 10
Osa05LNT0303200.1 5 Osa05LNG0303200 14294833-14297297 sense lncRNA 2359 41.54303 2
Osa05LNT0303100.1 5 Osa05LNG0303100 14309615-14310154 intergenetic lncRNA (lincRNA) 540 56.66667 1
Osa05LNT0303300.1 5 Osa05LNG0303300 14427905-14432505 long non-coding(lnc) isoforms of known genes 3570 49.7479 6
Osa05LNT0518200.1 5 Osa05LNG0518200 14480529-14480754 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa05LNT0303400.2 5 Osa05LNG0303400 14498561-14506847 long non-coding(lnc) isoforms of known genes 3473 46.58796 10
Osa05LNT0303400.1 5 Osa05LNG0303400 14498561-14506847 long non-coding(lnc) isoforms of known genes 3680 45.97826 10
Osa05LNT0303500.1 5 Osa05LNG0303500 14598051-14606210 long non-coding(lnc) isoforms of known genes 2269 50.28647 6
Osa05LNT0303600.1 5 Osa05LNG0303600 14646804-14647551 intergenetic lncRNA (lincRNA) 748 52.54011 1
Osa05LNT0518300.1 5 Osa05LNG0518300 14672186-14672463 intergenetic lncRNA (lincRNA) 278 25.53957 1
Osa05LNT0518400.1 5 Osa05LNG0518400 14672186-14672463 intergenetic lncRNA (lincRNA) 278 25.53957 1
Osa05LNT0292300.1 5 Osa05LNG0292300 1502980-1509332 long non-coding(lnc) isoforms of known genes 4715 53.3404 5
Osa05LNT0303700.1 5 Osa05LNG0303700 15059889-15060486 intergenetic lncRNA (lincRNA) 598 49.66555 1
Osa05LNT0303800.1 5 Osa05LNG0303800 15066490-15067228 intergenetic lncRNA (lincRNA) 739 45.60217 1
Osa05LNT0303900.1 5 Osa05LNG0303900 15092105-15095114 long non-coding(lnc) isoforms of known genes 2622 45.76659 5
Osa05LNT0304000.1 5 Osa05LNG0304000 15526644-15527388 intergenetic lncRNA (lincRNA) 636 59.74843 2
Osa05LNT0304100.1 5 Osa05LNG0304100 15609569-15613588 long non-coding(lnc) isoforms of known genes 1542 40.66148 13
Osa05LNT0304200.1 5 Osa05LNG0304200 15617637-15624148 long non-coding(lnc) isoforms of known genes 2865 45.51483 7
Osa05LNT0304300.1 5 Osa05LNG0304300 15635377-15638517 long non-coding(lnc) isoforms of known genes 2000 43.95 6
Osa05LNT0304500.1 5 Osa05LNG0304500 15656749-15662427 long non-coding(lnc) isoforms of known genes 2930 40.64846 5
Osa05LNT0304400.1 5 Osa05LNG0304400 15676096-15676409 intergenetic lncRNA (lincRNA) 314 37.26115 1
Osa05LNT0304600.1 5 Osa05LNG0304600 15681979-15688151 long non-coding(lnc) isoforms of known genes 2094 41.3085 9
Osa05LNT0304700.1 5 Osa05LNG0304700 15710700-15729194 long non-coding(lnc) isoforms of known genes 429 62.47086 3
Osa05LNT0304800.2 5 Osa05LNG0304800 15775700-15778750 long non-coding(lnc) isoforms of known genes 1107 49.50316 6
Osa05LNT0304800.1 5 Osa05LNG0304800 15775700-15778750 long non-coding(lnc) isoforms of known genes 1056 49.81061 5
Osa05LNT0304900.1 5 Osa05LNG0304900 15873585-15880419 long non-coding(lnc) isoforms of known genes 2322 48.62188 10
Osa05LNT0305000.1 5 Osa05LNG0305000 15998582-16011131 long non-coding(lnc) isoforms of known genes 2267 42.3026 11
Osa05LNT0305100.1 5 Osa05LNG0305100 16019208-16023701 long non-coding(lnc) isoforms of known genes 1141 45.22349 6
Osa05LNT0305200.1 5 Osa05LNG0305200 16184119-16186658 long non-coding(lnc) isoforms of known genes 2350 43.48936 2