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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0455100.1 1 Osa01LNG0455100 9369681-9369885 intergenetic lncRNA (lincRNA) 205 25.36585 1
Osa01LNT0013500.1 1 Osa01LNG0013500 9394143-9396602 long non-coding(lnc) isoforms of known genes 621 51.36876 3
Osa01LNT0013600.1 1 Osa01LNG0013600 9626942-9630147 long non-coding(lnc) isoforms of known genes 970 54.02062 4
Osa01LNT0013700.1 1 Osa01LNG0013700 9644124-9651434 long non-coding(lnc) isoforms of known genes 3218 48.66377 10
Osa01LNT0013700.2 1 Osa01LNG0013700 9644124-9651434 long non-coding(lnc) isoforms of known genes 3307 48.32174 10
Osa01LNT0013800.1 1 Osa01LNG0013800 9670733-9675842 long non-coding(lnc) isoforms of known genes 1494 50.0 11
Osa01LNT0014000.1 1 Osa01LNG0014000 9793959-9800301 long non-coding(lnc) isoforms of known genes 1672 41.14833 11
Osa01LNT0013900.1 1 Osa01LNG0013900 9810245-9810675 intergenetic lncRNA (lincRNA) 431 67.98144 1
Osa01LNT0014100.1 1 Osa01LNG0014100 9889550-9894305 long non-coding(lnc) isoforms of known genes 1609 45.867 17
Osa10LNT0058700.1 10 Osa10LNG0058700 100437-103373 long non-coding(lnc) isoforms of known genes 1897 49.13021 8
Osa10LNT0059300.1 10 Osa10LNG0059300 1007665-1012906 long non-coding(lnc) isoforms of known genes 3265 45.39051 11
Osa10LNT0059100.1 10 Osa10LNG0059100 1016395-1017222 intergenetic lncRNA (lincRNA) 711 38.81857 2
Osa10LNT0066100.1 10 Osa10LNG0066100 10165148-10167567 intergenetic lncRNA (lincRNA) 522 40.42146 2
Osa10LNT0066200.2 10 Osa10LNG0066200 10216071-10218310 long non-coding(lnc) isoforms of known genes 1113 47.5292 4
Osa10LNT0066200.1 10 Osa10LNG0066200 10216071-10218310 long non-coding(lnc) isoforms of known genes 1647 45.90164 3
Osa10LNT0066300.1 10 Osa10LNG0066300 10305149-10305579 intergenetic lncRNA (lincRNA) 431 35.96288 1
Osa10LNT0059200.1 10 Osa10LNG0059200 1031403-1037595 sense lncRNA 4117 46.00437 7
Osa10LNT0066400.1 10 Osa10LNG0066400 10411125-10418560 long non-coding(lnc) isoforms of known genes 2478 47.94189 12
Osa10LNT0572700.1 10 Osa10LNG0572700 10472230-10472474 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa10LNT0572800.1 10 Osa10LNG0572800 10472230-10472474 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa10LNT0573000.1 10 Osa10LNG0573000 10472541-10472855 intergenetic lncRNA (lincRNA) 315 26.66667 1
Osa10LNT0572900.1 10 Osa10LNG0572900 10472541-10472855 intergenetic lncRNA (lincRNA) 315 26.66667 1
Osa10LNT0569100.1 10 Osa10LNG0569100 1051727-1052001 intronic lncRNA 275 28.36364 1
Osa10LNT0569200.1 10 Osa10LNG0569200 1051727-1052001 intronic lncRNA 275 28.36364 1
Osa10LNT0066500.1 10 Osa10LNG0066500 10539940-10544799 long non-coding(lnc) isoforms of known genes 785 55.41401 4
Osa10LNT0573100.1 10 Osa10LNG0573100 10740248-10740501 intergenetic lncRNA (lincRNA) 254 49.2126 1
Osa10LNT0066600.1 10 Osa10LNG0066600 10766629-10775843 sense lncRNA 1394 44.69154 2
Osa10LNT0067600.1 10 Osa10LNG0067600 10813962-10814319 intergenetic lncRNA (lincRNA) 358 33.51955 1
Osa10LNT0059400.2 10 Osa10LNG0059400 1085238-1089511 long non-coding(lnc) isoforms of known genes 2683 48.56504 7
Osa10LNT0059400.1 10 Osa10LNG0059400 1085238-1089511 long non-coding(lnc) isoforms of known genes 2361 49.72469 7
Osa10LNT0067700.1 10 Osa10LNG0067700 10853678-10854203 intergenetic lncRNA (lincRNA) 526 35.55133 1
Osa10LNT0067800.3 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1465 55.22184 1
Osa10LNT0067800.2 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1462 55.19836 1
Osa10LNT0067800.1 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1472 55.09511 1
Osa10LNT0066700.1 10 Osa10LNG0066700 10917415-10918294 intergenetic lncRNA (lincRNA) 880 28.06818 1
Osa10LNT0066800.1 10 Osa10LNG0066800 10928348-10931710 long non-coding(lnc) isoforms of known genes 1972 45.28398 5
Osa10LNT0059600.1 10 Osa10LNG0059600 1092855-1096873 long non-coding(lnc) isoforms of known genes 1511 52.74653 4
Osa10LNT0066900.3 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 3024 39.48413 4
Osa10LNT0066900.2 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 2000 43.45 6
Osa10LNT0066900.1 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 2952 40.2439 5
Osa10LNT0573200.1 10 Osa10LNG0573200 11082843-11083114 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa10LNT0573300.1 10 Osa10LNG0573300 11082844-11083114 intergenetic lncRNA (lincRNA) 271 28.04428 1
Osa10LNT0573400.1 10 Osa10LNG0573400 11083181-11083426 intergenetic lncRNA (lincRNA) 246 24.39024 1
Osa10LNT0573500.1 10 Osa10LNG0573500 11083181-11083426 intergenetic lncRNA (lincRNA) 246 24.39024 1
Osa10LNT0059500.1 10 Osa10LNG0059500 1118262-1118843 intergenetic lncRNA (lincRNA) 582 56.70103 1
Osa10LNT0067000.1 10 Osa10LNG0067000 11191930-11204088 long non-coding(lnc) isoforms of known genes 5176 44.70634 14
Osa10LNT0067100.1 10 Osa10LNG0067100 11305125-11317869 long non-coding(lnc) isoforms of known genes 6354 42.4457 11
Osa10LNT0059700.1 10 Osa10LNG0059700 1139929-1141429 long non-coding(lnc) isoforms of known genes 1392 51.07759 2
Osa10LNT0067200.1 10 Osa10LNG0067200 11572476-11576077 sense lncRNA 2407 47.69423 3
Osa10LNT0067200.2 10 Osa10LNG0067200 11572476-11576077 sense lncRNA 2322 48.32041 4
Osa10LNT0067300.1 10 Osa10LNG0067300 11579844-11580779 intergenetic lncRNA (lincRNA) 817 40.88127 2
Osa10LNT0067400.1 10 Osa10LNG0067400 11596476-11599855 sense lncRNA 877 51.65336 3
Osa10LNT0067500.1 10 Osa10LNG0067500 11607182-11609027 Antisense lncRNA 383 52.21932 3
Osa10LNT0067900.2 10 Osa10LNG0067900 11649673-11659326 long non-coding(lnc) isoforms of known genes 2960 42.60135 6
Osa10LNT0067900.1 10 Osa10LNG0067900 11649673-11659326 long non-coding(lnc) isoforms of known genes 4009 45.92168 8
Osa10LNT0068000.2 10 Osa10LNG0068000 11807260-11817833 long non-coding(lnc) isoforms of known genes 2862 41.8239 15
Osa10LNT0068000.1 10 Osa10LNG0068000 11807260-11817833 long non-coding(lnc) isoforms of known genes 2847 41.83351 15
Osa10LNT0059900.2 10 Osa10LNG0059900 1189829-1203171 long non-coding(lnc) isoforms of known genes 2611 50.09575 9
Osa10LNT0059900.1 10 Osa10LNG0059900 1189829-1203171 long non-coding(lnc) isoforms of known genes 6895 47.84627 15
Osa10LNT0068100.1 10 Osa10LNG0068100 11955054-11956008 intergenetic lncRNA (lincRNA) 955 49.42408 1
Osa10LNT0068200.1 10 Osa10LNG0068200 12113672-12116360 long non-coding(lnc) isoforms of known genes 1889 46.58549 2
Osa10LNT0068300.1 10 Osa10LNG0068300 12121973-12125223 intergenetic lncRNA (lincRNA) 1065 44.31925 2
Osa10LNT0573600.1 10 Osa10LNG0573600 12220212-12220488 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa10LNT0573700.1 10 Osa10LNG0573700 12220212-12220488 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa10LNT0059800.1 10 Osa10LNG0059800 1223721-1227276 intergenetic lncRNA (lincRNA) 3483 43.38214 2
Osa10LNT0068400.1 10 Osa10LNG0068400 12307928-12311689 long non-coding(lnc) isoforms of known genes 3053 50.21291 6
Osa10LNT0068500.1 10 Osa10LNG0068500 12340872-12350821 long non-coding(lnc) isoforms of known genes 2396 50.20868 14
Osa10LNT0060000.1 10 Osa10LNG0060000 1268581-1269448 intergenetic lncRNA (lincRNA) 868 43.89401 1
Osa10LNT0068600.1 10 Osa10LNG0068600 12879408-12880884 long non-coding(lnc) isoforms of known genes 742 54.44744 2
Osa10LNT0068700.1 10 Osa10LNG0068700 12882240-12882972 sense lncRNA 247 51.82186 2
Osa10LNT0068800.1 10 Osa10LNG0068800 12899339-12902125 long non-coding(lnc) isoforms of known genes 1446 48.40941 4
Osa10LNT0068900.3 10 Osa10LNG0068900 13037019-13040650 long non-coding(lnc) isoforms of known genes 1803 44.2041 6
Osa10LNT0068900.2 10 Osa10LNG0068900 13037019-13040650 long non-coding(lnc) isoforms of known genes 2316 41.62349 6
Osa10LNT0068900.1 10 Osa10LNG0068900 13037019-13040650 long non-coding(lnc) isoforms of known genes 1975 44.4557 5
Osa10LNT0069000.3 10 Osa10LNG0069000 13080825-13084158 long non-coding(lnc) isoforms of known genes 2436 45.60755 5
Osa10LNT0069000.2 10 Osa10LNG0069000 13080825-13084158 long non-coding(lnc) isoforms of known genes 1365 53.62637 5
Osa10LNT0069000.1 10 Osa10LNG0069000 13080825-13084158 long non-coding(lnc) isoforms of known genes 1371 53.6105 5
Osa10LNT0069100.1 10 Osa10LNG0069100 13091034-13096744 long non-coding(lnc) isoforms of known genes 1794 47.77035 9
Osa10LNT0069300.2 10 Osa10LNG0069300 13231204-13255006 long non-coding(lnc) isoforms of known genes 4840 43.30579 38
Osa10LNT0069300.1 10 Osa10LNG0069300 13231204-13255006 long non-coding(lnc) isoforms of known genes 5725 41.90393 37
Osa10LNT0069200.1 10 Osa10LNG0069200 13258240-13259300 long non-coding(lnc) isoforms of known genes 689 61.39332 4
Osa10LNT0069200.2 10 Osa10LNG0069200 13258240-13259300 long non-coding(lnc) isoforms of known genes 668 61.67665 4
Osa10LNT0069400.1 10 Osa10LNG0069400 13289659-13292217 long non-coding(lnc) isoforms of known genes 1054 44.40228 8
Osa10LNT0069700.1 10 Osa10LNG0069700 13294380-13303479 long non-coding(lnc) isoforms of known genes 3379 45.33886 17
Osa10LNT0069500.1 10 Osa10LNG0069500 13337617-13338526 intergenetic lncRNA (lincRNA) 606 44.05941 2
Osa10LNT0069600.1 10 Osa10LNG0069600 13359632-13363138 long non-coding(lnc) isoforms of known genes 2211 51.06287 3
Osa10LNT0069800.1 10 Osa10LNG0069800 13497374-13503806 long non-coding(lnc) isoforms of known genes 3763 49.88041 5
Osa10LNT0069900.1 10 Osa10LNG0069900 13690163-13692165 sense lncRNA 1921 59.29204 2
Osa10LNT0070000.1 10 Osa10LNG0070000 13778968-13779225 Antisense lncRNA 258 36.43411 1
Osa10LNT0070100.1 10 Osa10LNG0070100 13870240-13875378 long non-coding(lnc) isoforms of known genes 2052 55.36062 4
Osa10LNT0070200.1 10 Osa10LNG0070200 13896201-13900807 long non-coding(lnc) isoforms of known genes 1815 47.7135 9
Osa10LNT0070300.1 10 Osa10LNG0070300 13932964-13935275 long non-coding(lnc) isoforms of known genes 1288 51.63043 5
Osa10LNT0070400.1 10 Osa10LNG0070400 13936651-13939572 long non-coding(lnc) isoforms of known genes 1205 50.45643 4
Osa10LNT0573800.1 10 Osa10LNG0573800 14306026-14306299 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0573900.1 10 Osa10LNG0573900 14306026-14306299 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0070500.1 10 Osa10LNG0070500 14326673-14330638 long non-coding(lnc) isoforms of known genes 1746 47.8236 14
Osa10LNT0070500.2 10 Osa10LNG0070500 14326673-14330638 long non-coding(lnc) isoforms of known genes 1750 47.88571 14
Osa10LNT0070600.1 10 Osa10LNG0070600 14341810-14353676 long non-coding(lnc) isoforms of known genes 4130 45.52058 27
Osa10LNT0070700.1 10 Osa10LNG0070700 14357097-14362380 long non-coding(lnc) isoforms of known genes 2412 49.41957 13
Osa10LNT0070800.1 10 Osa10LNG0070800 14433948-14434802 intergenetic lncRNA (lincRNA) 855 51.81287 1