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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0305300.1 5 Osa05LNG0305300 16253132-16264981 long non-coding(lnc) isoforms of known genes 3162 43.83302 19
Osa05LNT0305400.2 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 2935 45.28109 13
Osa05LNT0305400.3 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 3280 42.71341 8
Osa05LNT0305400.1 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 2841 45.33615 14
Osa05LNT0305500.1 5 Osa05LNG0305500 16297074-16300385 long non-coding(lnc) isoforms of known genes 2486 46.90265 2
Osa05LNT0511900.1 5 Osa05LNG0511900 1632695-1632900 intergenetic lncRNA (lincRNA) 206 48.54369 1
Osa05LNT0305600.1 5 Osa05LNG0305600 16344071-16346557 long non-coding(lnc) isoforms of known genes 1491 42.45473 4
Osa05LNT0512000.1 5 Osa05LNG0512000 1636798-1637003 intergenetic lncRNA (lincRNA) 206 48.54369 1
Osa05LNT0305700.1 5 Osa05LNG0305700 16421495-16423179 long non-coding(lnc) isoforms of known genes 881 56.52667 5
Osa05LNT0518500.1 5 Osa05LNG0518500 16621528-16621790 intergenetic lncRNA (lincRNA) 263 24.3346 1
Osa05LNT0305800.1 5 Osa05LNG0305800 16622355-16625752 long non-coding(lnc) isoforms of known genes 1094 62.88848 4
Osa05LNT0305900.1 5 Osa05LNG0305900 16702120-16705206 long non-coding(lnc) isoforms of known genes 2473 61.09988 4
Osa05LNT0518700.1 5 Osa05LNG0518700 16710422-16710697 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa05LNT0518600.1 5 Osa05LNG0518600 16710422-16710697 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa05LNT0306000.1 5 Osa05LNG0306000 16781887-16786133 long non-coding(lnc) isoforms of known genes 2156 49.16512 4
Osa05LNT0306100.2 5 Osa05LNG0306100 16977286-16982184 long non-coding(lnc) isoforms of known genes 1715 52.18659 9
Osa05LNT0306100.1 5 Osa05LNG0306100 16977286-16982184 long non-coding(lnc) isoforms of known genes 1722 52.14866 9
Osa05LNT0306200.2 5 Osa05LNG0306200 16984532-16987132 long non-coding(lnc) isoforms of known genes 884 45.13575 5
Osa05LNT0306200.1 5 Osa05LNG0306200 16984532-16987132 long non-coding(lnc) isoforms of known genes 1353 40.05913 5
Osa05LNT0306300.1 5 Osa05LNG0306300 16988964-16993972 long non-coding(lnc) isoforms of known genes 1291 50.6584 5
Osa05LNT0306400.1 5 Osa05LNG0306400 17006521-17011746 long non-coding(lnc) isoforms of known genes 2005 43.04239 17
Osa05LNT0306600.1 5 Osa05LNG0306600 17051414-17062707 long non-coding(lnc) isoforms of known genes 3999 44.7862 20
Osa05LNT0306500.2 5 Osa05LNG0306500 17119563-17120402 intergenetic lncRNA (lincRNA) 550 47.63636 3
Osa05LNT0306500.1 5 Osa05LNG0306500 17119563-17120402 intergenetic lncRNA (lincRNA) 364 39.28571 2
Osa05LNT0306700.1 5 Osa05LNG0306700 17318476-17319784 sense lncRNA 813 50.67651 2
Osa05LNT0306800.1 5 Osa05LNG0306800 17343645-17347613 long non-coding(lnc) isoforms of known genes 3593 49.90259 4
Osa05LNT0306900.1 5 Osa05LNG0306900 17433072-17433699 intergenetic lncRNA (lincRNA) 535 67.66355 2
Osa05LNT0307100.1 5 Osa05LNG0307100 17441754-17445913 long non-coding(lnc) isoforms of known genes 3323 44.32741 2
Osa05LNT0307000.1 5 Osa05LNG0307000 17482470-17483784 intergenetic lncRNA (lincRNA) 1168 54.10959 2
Osa05LNT0307200.1 5 Osa05LNG0307200 17621500-17623499 long non-coding(lnc) isoforms of known genes 1061 56.64467 6
Osa05LNT0307300.1 5 Osa05LNG0307300 17794142-17795130 sense lncRNA 453 54.74614 2
Osa05LNT0307400.1 5 Osa05LNG0307400 17846080-17847487 intergenetic lncRNA (lincRNA) 1408 51.70455 1
Osa05LNT0307500.1 5 Osa05LNG0307500 17854913-17865113 long non-coding(lnc) isoforms of known genes 5205 41.44092 13
Osa05LNT0307600.1 5 Osa05LNG0307600 17880820-17882234 long non-coding(lnc) isoforms of known genes 681 53.01028 3
Osa05LNT0307700.1 5 Osa05LNG0307700 17942072-17945452 long non-coding(lnc) isoforms of known genes 1899 44.91838 9
Osa05LNT0307800.1 5 Osa05LNG0307800 18001558-18007379 long non-coding(lnc) isoforms of known genes 2097 50.5484 5
Osa05LNT0307900.1 5 Osa05LNG0307900 18161343-18169055 long non-coding(lnc) isoforms of known genes 1493 52.64568 7
Osa05LNT0290400.1 5 Osa05LNG0290400 182380-184740 long non-coding(lnc) isoforms of known genes 986 48.07302 5
Osa05LNT0518800.1 5 Osa05LNG0518800 18272252-18272479 intergenetic lncRNA (lincRNA) 228 22.80702 1
Osa05LNT0518900.1 5 Osa05LNG0518900 18303233-18303454 intergenetic lncRNA (lincRNA) 222 28.37838 1
Osa05LNT0519000.1 5 Osa05LNG0519000 18303233-18303454 intergenetic lncRNA (lincRNA) 222 28.37838 1
Osa05LNT0292400.2 5 Osa05LNG0292400 1830765-1833326 long non-coding(lnc) isoforms of known genes 1262 50.15848 7
Osa05LNT0292400.1 5 Osa05LNG0292400 1830765-1833326 long non-coding(lnc) isoforms of known genes 1585 47.06625 5
Osa05LNT0308000.1 5 Osa05LNG0308000 18313487-18318438 long non-coding(lnc) isoforms of known genes 2979 42.59819 6
Osa05LNT0308100.1 5 Osa05LNG0308100 18370452-18371184 long non-coding(lnc) isoforms of known genes 661 53.70651 2
Osa05LNT0308200.1 5 Osa05LNG0308200 18383597-18385808 long non-coding(lnc) isoforms of known genes 1027 44.49854 3
Osa05LNT0308200.2 5 Osa05LNG0308200 18383597-18385808 long non-coding(lnc) isoforms of known genes 1034 44.58414 3
Osa05LNT0519100.1 5 Osa05LNG0519100 18482023-18482263 intergenetic lncRNA (lincRNA) 241 29.04564 1
Osa05LNT0519200.1 5 Osa05LNG0519200 18482032-18482254 intergenetic lncRNA (lincRNA) 223 28.25112 1
Osa05LNT0519300.1 5 Osa05LNG0519300 18602801-18603059 intergenetic lncRNA (lincRNA) 259 41.31274 1