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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0311300.1 5 Osa05LNG0311300 21184600-21192934 long non-coding(lnc) isoforms of known genes 3328 51.89303 3
Osa05LNT0311400.1 5 Osa05LNG0311400 21231712-21232751 intergenetic lncRNA (lincRNA) 1040 61.25 1
Osa05LNT0292800.1 5 Osa05LNG0292800 2131194-2131737 intergenetic lncRNA (lincRNA) 544 58.27206 1
Osa05LNT0311500.1 5 Osa05LNG0311500 21342205-21345468 long non-coding(lnc) isoforms of known genes 1971 61.74531 7
Osa05LNT0520100.1 5 Osa05LNG0520100 21352189-21352449 intergenetic lncRNA (lincRNA) 261 28.35249 1
Osa05LNT0311600.1 5 Osa05LNG0311600 21415028-21420708 long non-coding(lnc) isoforms of known genes 1978 47.97776 14
Osa05LNT0311600.2 5 Osa05LNG0311600 21415028-21420708 long non-coding(lnc) isoforms of known genes 2688 44.60565 14
Osa05LNT0311700.2 5 Osa05LNG0311700 21451049-21457121 sense lncRNA 5987 42.20812 2
Osa05LNT0311700.1 5 Osa05LNG0311700 21451049-21457121 sense lncRNA 2567 45.07207 4
Osa05LNT0311800.1 5 Osa05LNG0311800 21567370-21571263 long non-coding(lnc) isoforms of known genes 1791 52.93132 3
Osa05LNT0311900.2 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1857 42.11093 3
Osa05LNT0311900.1 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1846 42.36186 3
Osa05LNT0311900.3 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1465 44.7099 4
Osa05LNT0312000.1 5 Osa05LNG0312000 21699330-21703558 long non-coding(lnc) isoforms of known genes 1691 59.43229 4
Osa05LNT0312100.1 5 Osa05LNG0312100 21705751-21707209 sense lncRNA 841 50.05945 2
Osa05LNT0312300.1 5 Osa05LNG0312300 21889050-21893084 Antisense lncRNA 2650 39.66038 8
Osa05LNT0312300.2 5 Osa05LNG0312300 21889050-21893084 Antisense lncRNA 2141 40.72863 9
Osa05LNT0312200.1 5 Osa05LNG0312200 21894387-21896812 long non-coding(lnc) isoforms of known genes 2197 50.02276 3
Osa05LNT0312500.1 5 Osa05LNG0312500 21942980-21959335 long non-coding(lnc) isoforms of known genes 6458 44.73521 23
Osa05LNT0312400.1 5 Osa05LNG0312400 22033934-22038045 Antisense lncRNA 1041 41.69068 6
Osa05LNT0312400.2 5 Osa05LNG0312400 22033934-22038045 Antisense lncRNA 2210 37.55656 6
Osa05LNT0293000.2 5 Osa05LNG0293000 2204256-2207098 long non-coding(lnc) isoforms of known genes 1622 39.95068 2
Osa05LNT0293000.1 5 Osa05LNG0293000 2204256-2207098 long non-coding(lnc) isoforms of known genes 593 51.43339 3
Osa05LNT0292900.1 5 Osa05LNG0292900 2207519-2209503 intergenetic lncRNA (lincRNA) 912 45.39474 2
Osa05LNT0312600.1 5 Osa05LNG0312600 22160242-22162325 long non-coding(lnc) isoforms of known genes 905 53.92265 4
Osa05LNT0312700.1 5 Osa05LNG0312700 22214698-22219616 long non-coding(lnc) isoforms of known genes 1918 49.00938 11
Osa05LNT0312800.1 5 Osa05LNG0312800 22238995-22241620 long non-coding(lnc) isoforms of known genes 2286 58.88014 5
Osa05LNT0312900.1 5 Osa05LNG0312900 22263224-22266786 long non-coding(lnc) isoforms of known genes 1359 51.3613 9
Osa05LNT0312900.2 5 Osa05LNG0312900 22263224-22266786 long non-coding(lnc) isoforms of known genes 1354 51.32939 9
Osa05LNT0313000.1 5 Osa05LNG0313000 22303574-22306359 long non-coding(lnc) isoforms of known genes 2020 43.21782 5
Osa05LNT0313100.1 5 Osa05LNG0313100 22389647-22389864 Antisense lncRNA 218 35.77982 1
Osa05LNT0313200.1 5 Osa05LNG0313200 22430052-22435756 intergenetic lncRNA (lincRNA) 5705 42.43646 1
Osa05LNT0313300.1 5 Osa05LNG0313300 22440648-22445327 long non-coding(lnc) isoforms of known genes 1705 50.49853 11
Osa05LNT0520300.1 5 Osa05LNG0520300 22543048-22543321 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa05LNT0520200.1 5 Osa05LNG0520200 22543048-22543321 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa05LNT0313400.1 5 Osa05LNG0313400 22553231-22561060 long non-coding(lnc) isoforms of known genes 2570 45.05837 9
Osa05LNT0293100.1 5 Osa05LNG0293100 2258068-2259902 sense lncRNA 1733 50.25967 2
Osa05LNT0313500.1 5 Osa05LNG0313500 22630231-22632486 long non-coding(lnc) isoforms of known genes 774 52.06718 6
Osa05LNT0313600.1 5 Osa05LNG0313600 22706591-22714674 long non-coding(lnc) isoforms of known genes 4834 46.89698 11
Osa05LNT0313600.2 5 Osa05LNG0313600 22706591-22714674 long non-coding(lnc) isoforms of known genes 4710 47.19745 11
Osa05LNT0313700.1 5 Osa05LNG0313700 22725538-22734007 long non-coding(lnc) isoforms of known genes 3937 44.09449 13
Osa05LNT0313700.2 5 Osa05LNG0313700 22725538-22734007 long non-coding(lnc) isoforms of known genes 3554 45.30107 15
Osa05LNT0313800.1 5 Osa05LNG0313800 22770094-22774072 long non-coding(lnc) isoforms of known genes 1209 54.92142 8
Osa05LNT0314000.1 5 Osa05LNG0314000 22776072-22785036 long non-coding(lnc) isoforms of known genes 4629 44.00518 15
Osa05LNT0313900.1 5 Osa05LNG0313900 22785320-22785638 intergenetic lncRNA (lincRNA) 319 73.04075 1
Osa05LNT0314100.1 5 Osa05LNG0314100 22869859-22873172 intergenetic lncRNA (lincRNA) 3314 44.38745 1
Osa05LNT0314100.2 5 Osa05LNG0314100 22869859-22873172 intergenetic lncRNA (lincRNA) 2836 45.38082 3
Osa05LNT0314200.1 5 Osa05LNG0314200 22904302-22906120 intergenetic lncRNA (lincRNA) 1143 46.89414 2
Osa05LNT0314300.1 5 Osa05LNG0314300 22946525-22946733 intergenetic lncRNA (lincRNA) 209 43.0622 1
Osa05LNT0314400.1 5 Osa05LNG0314400 22955512-22960812 long non-coding(lnc) isoforms of known genes 3201 46.42299 5