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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0297300.2 5 Osa05LNG0297300 6198344-6200904 intergenetic lncRNA (lincRNA) 1418 47.60226 3
Osa05LNT0513800.1 5 Osa05LNG0513800 6302747-6303021 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0513700.1 5 Osa05LNG0513700 6302747-6303021 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0513900.1 5 Osa05LNG0513900 6303236-6303462 intergenetic lncRNA (lincRNA) 227 38.76652 1
Osa05LNT0297400.2 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2778 40.96472 18
Osa05LNT0297400.3 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2635 41.17647 17
Osa05LNT0297400.1 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2872 40.8078 18
Osa05LNT0297500.1 5 Osa05LNG0297500 6425734-6434639 intergenetic lncRNA (lincRNA) 956 45.60669 8
Osa05LNT0297600.1 5 Osa05LNG0297600 6468141-6470940 long non-coding(lnc) isoforms of known genes 2727 40.59406 2
Osa05LNT0514000.1 5 Osa05LNG0514000 6597965-6598238 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa05LNT0514100.1 5 Osa05LNG0514100 6597965-6598238 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa05LNT0297700.1 5 Osa05LNG0297700 6666888-6671865 long non-coding(lnc) isoforms of known genes 1717 53.17414 6
Osa05LNT0511800.1 5 Osa05LNG0511800 682655-682868 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa05LNT0297800.1 5 Osa05LNG0297800 6843396-6851431 long non-coding(lnc) isoforms of known genes 3522 41.39693 18
Osa05LNT0514300.1 5 Osa05LNG0514300 6872744-6873015 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa05LNT0514200.1 5 Osa05LNG0514200 6872744-6873015 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa05LNT0291000.1 5 Osa05LNG0291000 687860-690346 long non-coding(lnc) isoforms of known genes 1161 50.1292 2
Osa05LNT0297900.1 5 Osa05LNG0297900 6936886-6939626 long non-coding(lnc) isoforms of known genes 2154 44.47539 6
Osa05LNT0298000.3 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 1982 44.65187 10
Osa05LNT0298000.2 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 2407 42.75031 9
Osa05LNT0298000.1 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 1500 45.13333 9
Osa05LNT0298100.2 5 Osa05LNG0298100 7062008-7066128 long non-coding(lnc) isoforms of known genes 2716 47.42268 7
Osa05LNT0298100.1 5 Osa05LNG0298100 7062008-7066128 long non-coding(lnc) isoforms of known genes 2230 48.38565 5
Osa05LNT0298200.1 5 Osa05LNG0298200 7231490-7231948 intergenetic lncRNA (lincRNA) 291 65.2921 2
Osa05LNT0298300.1 5 Osa05LNG0298300 7395147-7395437 intergenetic lncRNA (lincRNA) 291 62.8866 1
Osa05LNT0298400.1 5 Osa05LNG0298400 7398553-7403297 long non-coding(lnc) isoforms of known genes 1837 50.73489 5
Osa05LNT0298500.1 5 Osa05LNG0298500 7455582-7460900 long non-coding(lnc) isoforms of known genes 1198 47.41235 7
Osa05LNT0514500.1 5 Osa05LNG0514500 7502470-7502744 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa05LNT0514400.1 5 Osa05LNG0514400 7502470-7502744 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa05LNT0298600.1 5 Osa05LNG0298600 7634230-7648189 long non-coding(lnc) isoforms of known genes 4485 47.7592 21
Osa05LNT0298600.2 5 Osa05LNG0298600 7634230-7648189 long non-coding(lnc) isoforms of known genes 4665 47.60986 22
Osa05LNT0298700.1 5 Osa05LNG0298700 7685180-7692544 Antisense lncRNA 455 35.16484 2
Osa05LNT0298800.1 5 Osa05LNG0298800 7685330-7693417 sense lncRNA 1174 50.85179 2
Osa05LNT0298900.1 5 Osa05LNG0298900 7722255-7747982 sense lncRNA 510 55.88235 4
Osa05LNT0298900.2 5 Osa05LNG0298900 7722255-7747982 sense lncRNA 384 55.20833 3
Osa05LNT0299000.1 5 Osa05LNG0299000 7848169-7850668 long non-coding(lnc) isoforms of known genes 1822 46.65203 2
Osa05LNT0514600.1 5 Osa05LNG0514600 7851108-7851382 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0514700.1 5 Osa05LNG0514700 7851108-7851382 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0291200.1 5 Osa05LNG0291200 788600-791379 long non-coding(lnc) isoforms of known genes 1574 44.85388 4
Osa05LNT0514800.1 5 Osa05LNG0514800 7920975-7921217 intergenetic lncRNA (lincRNA) 243 27.57202 1
Osa05LNT0514900.1 5 Osa05LNG0514900 7921284-7921558 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0515000.1 5 Osa05LNG0515000 7921284-7921558 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0291100.1 5 Osa05LNG0291100 809696-811312 intergenetic lncRNA (lincRNA) 1509 37.9059 2
Osa05LNT0299100.1 5 Osa05LNG0299100 8107373-8108277 intergenetic lncRNA (lincRNA) 818 40.5868 2
Osa05LNT0291300.1 5 Osa05LNG0291300 839423-841577 intergenetic lncRNA (lincRNA) 734 48.50136 2
Osa05LNT0299200.1 5 Osa05LNG0299200 8441449-8442927 intronic lncRNA 1479 40.2975 1
Osa05LNT0299400.2 5 Osa05LNG0299400 8526487-8535118 long non-coding(lnc) isoforms of known genes 5552 45.76729 9
Osa05LNT0299400.1 5 Osa05LNG0299400 8526487-8535118 long non-coding(lnc) isoforms of known genes 4855 46.48816 10
Osa05LNT0299300.1 5 Osa05LNG0299300 8578962-8580142 intergenetic lncRNA (lincRNA) 771 56.03113 2
Osa05LNT0299500.1 5 Osa05LNG0299500 8616503-8618486 long non-coding(lnc) isoforms of known genes 746 49.7319 5