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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0058000.1

TTAATTTCCGATGCAGCATCATCAAGATTCCCACACATATATACACATGCGTTTAATTAGCTTCGATCTCTCTCTTCTCTCTCCATGCGTGCAACCATGCATCATGCAGGTCAGGGCCAGGAGAGAAATATTAGCTAGCTAGGTTGTTGAGATCAGAACAACAAGCTCAAAGATGCATAGACATATGCATGCATGCAATGTAATGTGTGAATCTTGATGATGCCACGTCAGAAATCAC

Coding Potentia
Explanation CPC Score
noncoding -1.30101
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0058000.1 osa-miR156k Cleavage 4.5 20.261 1 21
Osa01LNT0058000.1 osa-miR172a Cleavage 1.0 6.017 1 21
Osa01LNT0058000.1 osa-miR172b Cleavage 0.0 6.017 1 21
Osa01LNT0058000.1 osa-miR172c Cleavage 1.0 6.017 1 21
Osa01LNT0058000.1 osa-miR172d-3p Cleavage 1.0 6.017 1 21
Osa01LNT0058000.1 osa-miR529b Cleavage 3.5 21.03 1 21
Osa01LNT0058000.1 osa-miR1426 Cleavage 4.0 6.017 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0058000.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0058000.1 1 nan Morphological trait Root RM1387 RM1067
Osa01LNT0058000.1 1 ph1 Morphological trait Dwarf RG236 C547
Osa01LNT0058000.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0058000.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0058000.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0058000.1 1 fla1 Morphological trait Culm/leaf RG810 RG331
Osa01LNT0058000.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0058000.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0058000.1 1 qHID-1 Morphological trait Seed RG810 RG331
Osa01LNT0058000.1 1 qTGW-1 Morphological trait Seed RG810 RG331
Osa01LNT0058000.1 1 nan Physiological trait Eating quality RG331 RG810
Osa01LNT0058000.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0058000.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0058000.1 1 qBMS1-2 Physiological trait Source activity RZ801 RG331
Osa01LNT0058000.1 1 qHID1-2 Morphological trait Seed RZ801 RG331
Osa01LNT0058000.1 1 qTGW1-3 Morphological trait Seed RZ801 RG331
Osa01LNT0058000.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa01LNT0058000.1 osa-MIR172b 100.0 238 1 238 5.9e-124 440
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus