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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0575200.1

TGATTTTGAGTTTTTTTTTTATCGGCCAATAGTATGGGGTGCCTCGGAGAGGCATATGCAAGAGAAAGAAGAGCGAAGAAAATGAACAAGCTCCATATATGTCAAAACTATATTTATTTATTACAATACAACTTTGTGCTATTCACTGAAAACTTTCTTTTTTTTAGTTTGGTTGTTTCTCTTTTATCGAAACAATATAGTAAATCTTTTGCTAGTTCCTCCTGGTGACCCTCTCTTCTGAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.764995
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0575200.1 osa-miR2118p Translation 5.0 19.261 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0575200.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0575200.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0575200.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0575200.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0575200.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0575200.1 10 nan Resistance or Tolerance Drought tolerance C809 R716
Osa10LNT0575200.1 10 nan Morphological trait Panicle/flower RM171 RM333
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus