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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0283700.2

GAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCTCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTACCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCAGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACTACTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0987946
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0283700.2 osa-miR6247 Cleavage 4.5 17.471 1 21
Osa04LNT0283700.2 osa-miR1854-5p Cleavage 3.5 17.01 1 21
Osa04LNT0283700.2 osa-miR1857-5p Cleavage 3.5 17.432 1 21
Osa04LNT0283700.2 osa-miR1861h Cleavage 4.5 23.167 1 20
Osa04LNT0283700.2 osa-miR1861j Cleavage 4.5 23.167 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0283700.2 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0283700.2 4 nan Morphological trait Root RM3276 RM3335
Osa04LNT0283700.2 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0283700.2 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0283700.2 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0283700.2 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0283700.2 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0283700.2 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0283700.2 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0283700.2 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0283700.2 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0283700.2 4 QGwp4 Physiological trait Source activity RG143 RG214
Osa04LNT0283700.2 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0283700.2 4 nan Physiological trait Eating quality RZ590 RG214
Osa04LNT0283700.2 4 nan Physiological trait Eating quality RZ590 RG214
Osa04LNT0283700.2 4 nan Morphological trait Root RG214 C1016
Osa04LNT0283700.2 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0283700.2 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0283700.2 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0283700.2 4 nan Morphological trait Panicle/flower RM303 RM348
Osa04LNT0283700.2 4 qSN-4b Resistance or Tolerance Drought tolerance RM255 RM349
Osa04LNT0283700.2 4 Xa2 Resistance or Tolerance Bacterial blight resistance RM317 RM349
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus