>Osa12LNT0130800.2

TCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGAAAACGGAAATACCCACATTAATAGCAAGCCCGAATTCCGGCATTGAATAGATCTGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCTAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCAGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGATACTGACATTGAGAGACGAAAGCTAGGGGAGCAAATGGGATGATGATGATGTCCGATCGATCTCGACGTACCCCGCCGTCCAAAAAGACTAAACAAGGAGGAGATTAGTACAT

Explanation	CPC Score
noncoding	-1.46531

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0130800.2	osa-miR439a	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439b	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439c	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439d	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439e	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439f	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439g	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439h	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR439i	Cleavage	5.0	20.673	1	21
Osa12LNT0130800.2	osa-miR1849	Translation	3.5	23.691	1	21
Osa12LNT0130800.2	osa-miR5515	Cleavage	4.0	21.486	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0130800.2	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0130800.2	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457
Osa12LNT0130800.2	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457
Osa12LNT0130800.2	12	nan	Morphological trait	Seed	RG543	RG81
Osa12LNT0130800.2	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus