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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0567800.1

AACCCTCCCGCCGTCACCACCCGTTCCTCCCCCGTTTGCCACGTCAGCTTGCCGCCCCAGAGGTGGGCGGCAGGGGCTATTTCTGCAATTTTTTTGGTCGATAGATTATTTCTGTAAATATTAAAAAAAAAAAATCTAAAACCGAAAAAAATTCTGATGGATATTGGGTAAGTGTGGGAGGTCAAATGGGCCTAAAGGGCCTGTCTGTCTGTCTTACACCAATGTTGTGTTTCTGTCCCCCTGCCATGGCAT

Coding Potentia
Explanation CPC Score
noncoding -1.11321
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa12LNT0567800.1 DTM_#DNAt_MULE_japo_Os0177 Chr12 - 25942583 25951172 153
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0567800.1 12 qLEI 4 Resistance or Tolerance Submergency tolerance RM5479 C901
Osa12LNT0567800.1 12 nan Resistance or Tolerance Submergency tolerance R1709 RM235
Osa12LNT0567800.1 12 nan Resistance or Tolerance Submergency tolerance RM5479 RM6953
Osa12LNT0567800.1 12 qSD12 Physiological trait Germination/dormancy RM3331 RM235
Osa12LNT0567800.1 12 qLEI12 Resistance or Tolerance Submergency tolerance nan nan
Osa12LNT0567800.1 12 qNEI12 Resistance or Tolerance Submergency tolerance nan nan
Osa12LNT0567800.1 12 qTIL12 Resistance or Tolerance Submergency tolerance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus