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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0568200.1

CTGATTTGACATGCCACATGGACATGACGTGTCCTTTTCTTTTTTTTTCTTCCTTTTCTTTCCTGTTTTCTTCTCATTCTTCTTTTTTTTCCTTTCTTCTGCTCGGGTCATAGAGAAAGGAGAATAAAAGGGGAAAAAGAGAAGAAAAAATGAAAAAGGGAGAAAATTAAATGGGTCCCATTTGTCAGTCAAAATAATGCCACGTCATATCCGCGTGGCATGCCACATCAACGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.738785
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa12LNT0568200.1 DTM_#DNAt_MULE_japo_Os0229 Chr12 - 26936735 26937233 233
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0568200.1 osa-miR7695-5p Cleavage 5.0 8.676 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0568200.1 12 qDRS12-1 Resistance or Tolerance Drought tolerance RG181 RG958
Osa12LNT0568200.1 12 qLEI 4 Resistance or Tolerance Submergency tolerance RM5479 C901
Osa12LNT0568200.1 12 nan Physiological trait Eating quality RM235 RM17
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus