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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0493900.1

ACATGGCATTATTTTGGACTGACAAATATGACCCATTTAAAATTTTTCCTTTTTCTTTTTTTCTTCTCTTTTTTTCCCTTTCTTCTCCTTTCTCTGTGACCTGAGCAGAAGAAAGGAAAAAAAGAAGAATGAGAAGAAAACGAAAAAGAAAAAAAAAGAAAAGAAGAAAAAAAAGAAAAGGACATGTCACGCCCATGTGGCATGCCACATCAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.599452
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa04LNT0493900.1 DTM_#DNAt_MULE_japo_Os0229 Chr4 + 20776846 20777380 212
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0493900.1 osa-miR7692-5p Translation 5.0 6.3 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0493900.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
Osa04LNT0493900.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0493900.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0493900.1 4 orl1 Morphological trait Culm/leaf S10628 C377
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus