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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0471400.1

CCCTTTTTTTCTCCTTTCTTATCCCTTTTTTTTTCTCCACTTTGCCTCTTTCCTCTCCCTTATGCCGCATTTTTCTCCACGCGAGGTGAGGAAGGAGAGAAAAGATGGGAAGAAAAAAAGGGAAAAAGAAAAATTAGCCAAGTCATCGTCCACGTGGCATAACACATAGGCAAGATTACGGTCAAACCAGTCTTTAGACCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.910307
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa03LNT0471400.1 DTM_#DNAt_MULE_japo_Os0222 Chr3 - 29370130 29370623 200
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0471400.1 osa-miR7695-5p Translation 3.0 14.841 1 24
Osa03LNT0471400.1 osa-miR7695-3p Cleavage 5.0 19.188 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0471400.1 3 nan Resistance or Tolerance Drought tolerance C746 RZ448
Osa03LNT0471400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0471400.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0471400.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0471400.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0471400.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus