>Osa09LNT0578000.1

ATTATTATTATTTATTTATTTATTTATTTATTTTTTCTCCCTTCTTCCTCTTTCATTTCTCTCTTCTTCGGCCTGTTCGACGCGGGGGAGCTCGAGGTGGCTTTAGTGGAGGAAGAAGATAAAAGAATAGGAGGAAAAAGAAAAGGGGAAAGGAAAAAACACCATATTATCGTCCACGTGGTGTGCCACGTACGCAAGACCACGGTCAATAGACGC

Explanation	CPC Score
noncoding (weak)	-0.731096

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0578000.1	DTM_#DNAt_MULE_japo_Os0222	Chr9	-	5124076	5124617	215

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0578000.1	osa-miR7695-3p	Cleavage	5.0	24.604	1	21
Osa09LNT0578000.1	osa-miR2919	Cleavage	4.0	17.973	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0578000.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0578000.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0578000.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0578000.1	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0578000.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0578000.1	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus