>Osa03LNT0468800.1

TGGCCCCAAATTGATACATCCCCTCTAGGATCCTACGTGGCGCTGATGTGGCAATGCCACATGGACGTGACGTGTCCTTTTCTTTTTTTTCTTTTTTTCCTTTTCTTTTCCGTTTTCTTCTCATTCTTCTTTTTTTTCCTTTCTTCAGAGAAAGGAGAAGAAATGGGAAAAAGGAGAAGAAAAAAGGAAAAAAGGAAAAAAATTAAATGG

Explanation	CPC Score
noncoding (weak)	-0.495163

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0468800.1	DTM_#DNAt_MULE_japo_Os0229	Chr3	+	22605290	22605812	209

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0468800.1	osa-miR5149	Cleavage	5.0	22.025	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0468800.1	3	qGL-3	Morphological trait	Seed	R19	C1677
Osa03LNT0468800.1	3	qLWR-3	Morphological trait	Seed	R19	C1677
Osa03LNT0468800.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0468800.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0468800.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0468800.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0468800.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0468800.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0468800.1	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0468800.1	3	nan	Resistance or Tolerance	Insect resistance	G332	R19
Osa03LNT0468800.1	3	nan	Morphological trait	Shoot/Seedling	RZ284	RZ403
Osa03LNT0468800.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0468800.1	3	nan	Morphological trait	Panicle/flower	RZ403	RZ452
Osa03LNT0468800.1	3	An5(t)	Morphological trait	Panicle/flower	C1677	R19

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus