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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0496000.1

CACTTAAGTCCACAAATTTACAAAGTGCACATTGAGGTCTCTAAACTTGATTTATTGTATCATCCCGGTCCAATGTCTCGTTTAACTGTGGTCTTGCCTACGTAGCACGCCACGTGGACAATGACATGGATTTTTTTTATTTTTTCTCCCTTCTTCCTTCTTTTTTCTCGGTGGTGAGAGGCGGCACGAGGGGAGGGGTTGTCGCAGTGGTGAAAAAGAAGGAAGAAGGGAGAAAAAAATTTAAAAAAAAATCCATATCATCGTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.867617
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa04LNT0496000.1 DTM_#DNAt_MULE_japo_Os0222 Chr4 + 33966896 33967358 264
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0496000.1 osa-miR7695-3p Cleavage 3.0 22.1 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0496000.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0496000.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0496000.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0496000.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0496000.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0496000.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0496000.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0496000.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0496000.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0496000.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0496000.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0496000.1 4 QGwp4 Physiological trait Source activity RG143 RG214
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus