>Osa12LNT0567000.1

ATCTATATACACATATACTGCAGTTCGTTCAGATAGATCACTCGGCGGCGGCGGCGGCGATGGCGATCGCCGGAGACGACAGCAACCACGGCGTCGACGACGCGCGCATTGCGCGCATCGCCGCCGCCATCACCGTCTTCCCCGGCTTCCCCAAGCCAGGTCGGTGCTAAGCTAGCTATAGCTAATTAGGTCCTTCTTCCTCCACATCATCTACTGCACAAGATTGTACTGCAGCCGCACGCAAAAAACTGTAACTTTATTTTTGTTCTTA

Explanation	CPC Score
noncoding	-1.01168

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0567000.1	osa-miR1437b-5p	Translation	5.0	10.493	1	21
Osa12LNT0567000.1	osa-miR395f	Cleavage	5.0	11.792	1	21
Osa12LNT0567000.1	osa-miR1861n	Translation	4.5	9.958	1	22
Osa12LNT0567000.1	osa-miR2868	Cleavage	4.5	9.57	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0567000.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0567000.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0567000.1	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953
Osa12LNT0567000.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0567000.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus