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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0565100.1

ATCAACTGGCACGCTAGCACACCCGAAGGTGAGCTTTAGACCTGCACTGGAGTTAAGCAGATCTCCTAGGTCTCGTGTTTTCTGTCAACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATAATTTTTATGGGGCAATTGCATCTATGCCCCCACTTTGA

Coding Potentia
Explanation CPC Score
noncoding -1.46755
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa12LNT0565100.1 DTM_#DNAt_MULE_japo_Os0709 Chr12 - 21198171 21199452 29
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0565100.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0565100.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus