>Osa01LNT0462700.1

TCGGGGGTGCCAGGCCACGTGTGCGATTGTGTCTGCCTCAAACCTCTAGTCATGATACTCCTGATCCCATGTCACCGACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATTGCATTTCATGTTAACGTTCGTCCTCGTTCGTTCGCTTGTTCACGTTCCCT

Explanation	CPC Score
noncoding	-1.41104

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0462700.1	1	rrw1b	Resistance or Tolerance	Other soil stress tolerance	C86	RG236
Osa01LNT0462700.1	1	qRNd1	Resistance or Tolerance	Other soil stress tolerance	RG236	C86
Osa01LNT0462700.1	1	ph1	Morphological trait	Dwarf	RG236	C547
Osa01LNT0462700.1	1	nan	Morphological trait	Root	RM1387	RM1067
Osa01LNT0462700.1	1	fla1	Morphological trait	Culm/leaf	RG810	RG331
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Other soil stress tolerance	RG810	RG331
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Other soil stress tolerance	RG810	RG331
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Other soil stress tolerance	RG810	RG331
Osa01LNT0462700.1	1	qHID-1	Morphological trait	Seed	RG810	RG331
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Drought tolerance	RZ14	R117
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Other disease resistance	RG109	RG236
Osa01LNT0462700.1	1	qTGW-1	Morphological trait	Seed	RG810	RG331
Osa01LNT0462700.1	1	nan	Resistance or Tolerance	Drought tolerance	RZ14	R117
Osa01LNT0462700.1	1	qPH1-1	Morphological trait	Shoot/Seedling	C86	RG236
Osa01LNT0462700.1	1	qBMS1-2	Physiological trait	Source activity	RZ801	RG331
Osa01LNT0462700.1	1	nan	Physiological trait	Eating quality	RG331	RG810
Osa01LNT0462700.1	1	qHID1-2	Morphological trait	Seed	RZ801	RG331
Osa01LNT0462700.1	1	qTGW1-3	Morphological trait	Seed	RZ801	RG331

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus