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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0003200.1

GGATCTTACATGGCGTTGACGTGATATGTCACACGGAATGACGTGACATCATTTTGACTGACAAATGGGTCACATTTAAAACTTTTCTTTTTTTTCTTCTCTTTTTTTCCCTTTCTTCTCCTTTCTCTGTGACCCGAGCAGAAGAAAGGAAAAAAAGAAGAATGAGAAGAAAACGAAGAAAAAGAAAAAGAAAAAGAAAAGAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.774028
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa01LNT0003200.1 DTM_#DNAt_MULE_japo_Os0229 Chr1 - 2785210 2785737 202
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0003200.1 1 gp1a Morphological trait Panicle/flower RM1 R753
Osa01LNT0003200.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0003200.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0003200.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus