>Osa06LNT0511000.1

TTCTTCTTTTCTTTTTCTTCGTTTTCTTCTCATTCTTTCTTTTTTCCTTTCTTCTGCTTGGGTCACAGAGAAAGGAGAAGAAAGGGAAAAAAAGAGAAGAAAAAAAGAAAAAGGAATTTTTTTTAACAGGACCTATTTGTCAGTTAAAATGATGCCACGTTATTCCGTGTGGCATGACACGTCAACGCCACGTAGGATCCTGAAGGGG

Explanation	CPC Score
noncoding (weak)	-0.752469

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0511000.1	DTM_#DNAt_MULE_japo_Os0229	Chr6	+	27574333	27574862	207

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0511000.1	osa-miR5530	Cleavage	4.5	21.955	1	21
Osa06LNT0511000.1	osa-miR7695-3p	Cleavage	5.0	21.533	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0511000.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0511000.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0511000.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0511000.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0511000.1	6	nan	Morphological trait	Root	RM4447	RM5509
Osa06LNT0511000.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0511000.1	6	ppl6.1	Resistance or Tolerance	Drought tolerance	RM3	CDO78
Osa06LNT0511000.1	6	nan	Resistance or Tolerance	Blast resistance	RG778	RZ682
Osa06LNT0511000.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0511000.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus