>Osa04LNT0495400.1

ACCTCAACACAAATAGCACGGCATTGAATGTCCGTTGGCACGTTGACTCAACCTTCCATCCACGGTGGCATGGCATTCAGCGCCAGTTGACGTGGTGCTGAGGTGTCTAAGTTCAGCGCCACACGATTTGGCGCTGAACTAAAGGATCATTTTTGAAATAAGTTTTGGCGATGGTTTATTTGTAAAATTAGTTTTTTCAAAGGGTTGAATTGTCAAAATTTGTGAGTA

Explanation	CPC Score
noncoding (weak)	-0.0568093

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa04LNT0495400.1	DTM_#DNAt_MULE_japo_Os0085	Chr4	+	30618438	30618781	223

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0495400.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348
Osa04LNT0495400.1	4	nan	Morphological trait	Panicle/flower	RM303	RM255
Osa04LNT0495400.1	4	qPN-4b	Resistance or Tolerance	Drought tolerance	RM317	RM255
Osa04LNT0495400.1	4	Xa2	Resistance or Tolerance	Bacterial blight resistance	RM317	RM349
Osa04LNT0495400.1	4	nan	Morphological trait	Root	RM3288	RM5503
Osa04LNT0495400.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0495400.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0495400.1	4	OsAOX1a	Resistance or Tolerance	Cold tolerance	R2737	R740
Osa04LNT0495400.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0495400.1	4	nan	Morphological trait	Root	RZ23	RM255

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus