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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0519600.1

TCAAACTTGTAGCCCTCGACGCGATCTACAACTTTGTAGTTGATTTTTTTTATTTTAAGTCATTTTTTATCCCAAAATGTAATTTTAAAATTAAAATTTCAAAATCTATAAACATGTAACAATATTTTGAGACCCTAAACAGTTTTAATTCAAAAACTTTTCAACTACAAAGTTGTAGGTCGCGTCGAGGGCTACAATTTTGA

Coding Potentia
Explanation CPC Score
noncoding -1.12349
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0519600.1 DTM_#DNAt_MULE_japo_Os0089 Chr5 + 18608052 18608765 202
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0519600.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0519600.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus