Transcript

Sequence

>Osa03LNT0472900.1

GAATGGAGGCGGCGGCGCCAGCCATGCTGGCGCCCTCCTCCCTGGGGCGGCGCCAGCATGGCTGGCGCCCTCCTCCTGCCACGTCGGTTCGCGTGCGCCACGGTGGCAGGAGGACGGCGCCAGAGTGGCTAGCGGCGCCGTCCCATTGGACGGCGCCGCCAGCCACTCTGGCGCCGCAAAAAGGACCATTTCTGAGATAAGTTTTTTCAGGAGTCTATTTGCGAAATAAGTTTTTCAAAAGGACCAAAATGTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.0985184

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0472900.1	DTM_#DNAt_MULE_japo_Os0105	Chr3	+	35617103	35618480	253

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0472900.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0472900.1	3	spp3.1	Morphological trait	Panicle/flower	RM130	RG1356
Osa03LNT0472900.1	3	yld3.2	Morphological trait	Seed	RM130	RG1356
Osa03LNT0472900.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472900.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472900.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus