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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0566900.1

AACTATGTGGCCGTCACAGGTGGCCTCACCTGTGACGGGCGCCAACCGTGGAGCCGTCACAGGTAAGACCACCTGTGACGGGCCCAACACTCTGGGCCGTCACAGGTGAGGTCACCTGTGACGGCCCTACAGATAGAGCCCGTCACAGGTGAGTTTGCCTAGAGCAATTTTATTTTATTTTATTTCACTTAGTTCTTTTATTTTCCTTAACATATTTTCACATACA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.28514
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0566900.1 12 nan Resistance or Tolerance Submergency tolerance R1709 RM235
Osa12LNT0566900.1 12 qSD12 Physiological trait Germination/dormancy RM3331 RM235
Osa12LNT0566900.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus