>Osa03LNT0462800.1

TTGGTTGTATCGTGATCCTGAGTGTGAAAAAACATCCGAAAAAATAAAATAAAAATGACACCGTTGCAACTCCATACAGAGAAACAGGAATGGAGGCGGCGGCGCCAGCCATGCTGGCGCCCTCCTCCTTGGGGCGGCGCCAGCCTCCTCCTGCCACGTCGGTTCGCGTGCGCCACGGTGGCAGGAGGACGGCGCCAGAGAGGCTGGCGCCGTCCCGTTGGATGACGGCGCCAGCCACTCTGGCGCCCCAAAAAG

Explanation	CPC Score
noncoding (weak)	-0.0581026

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0462800.1	DTM_#DNAt_MULE_japo_Os0105	Chr3	+	2956723	2958129	254

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0462800.1	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0462800.1	3	QSs3	Physiological trait	Sterility	RG348	RG944
Osa03LNT0462800.1	3	dth3.1	Resistance or Tolerance	Drought tolerance	RG104	RZ329
Osa03LNT0462800.1	3	nan	Resistance or Tolerance	Drought tolerance	RG348	RZ329
Osa03LNT0462800.1	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0462800.1	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0462800.1	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0462800.1	3	qFDN-3	Physiological trait	Flowering	RZ329	RG348
Osa03LNT0462800.1	3	nan	Morphological trait	Root	CDO20	RG409
Osa03LNT0462800.1	3	qHEJ-3	Morphological trait	Shoot/Seedling	RM175	RM22
Osa03LNT0462800.1	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0462800.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0462800.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0462800.1	3	rn3	Resistance or Tolerance	Drought tolerance	RM231	RM175
Osa03LNT0462800.1	3	qDEF-3	Physiological trait	Flowering	R518	C721
Osa03LNT0462800.1	3	QSbr3a	Resistance or Tolerance	Sheath blight resistance	RG348	RG944

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus