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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0481400.1

ATATATATATATATATATATATATATATATATATATATATATATATATATAAACCATGCAGCAACAGGGCCATGAAAAAAAAAAAGGTCAGCTCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAATATGGCTCAGCCGGCCACGTGGCTGAGCCATCTTTAGTCCCGGTTGGTGTGACCAACCGGGACTAAAGATC

Coding Potentia
Explanation CPC Score
noncoding -1.16327
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0481400.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0481400.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0481400.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0481400.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0481400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0481400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0481400.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0481400.1 2 qEL-2 Physiological trait Eating quality C370 C601
Osa02LNT0481400.1 2 qWA-2 Physiological trait Eating quality C370 C601
Osa02LNT0481400.1 2 qER-2 Physiological trait Eating quality C370 C601
Osa02LNT0481400.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0481400.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus