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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0553700.1

CTCTCTGGCGCCGTCCTCCTGCCACCGTGGCGCACGCGAACCGACGTGGCAGGAGGAGGGCGCCAGCCATGCTGGCGCTGCCCCAGGGAGGAGGGCGCCAGCATGGCTGGCGCCGCCGCCTCTATTCCTGTTTCTCTGTATGGAGTTGCAACGGTGTCATTTTTATTTTTTTTTTGATGTTTTTTCACACTCAGGATCACGATACAACCAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0139371
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa08LNT0553700.1 DTM_#DNAt_MULE_japo_Os0105 Chr8 - 16704545 16705471 210
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0553700.1 osa-miR5492 Cleavage 4.0 14.76 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0553700.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0553700.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0553700.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0553700.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus